Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   JMO16_RS08225 Genome accession   NZ_CP080566
Coordinates   1670743..1671189 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HL20835 isolate HL20835     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1665743..1676189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMO16_RS08195 (JMO16_08195) gcvPA 1666669..1668015 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  JMO16_RS08200 (JMO16_08200) gcvT 1668035..1669126 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  JMO16_RS08205 (JMO16_08205) - 1669285..1669809 (-) 525 WP_001015120.1 shikimate kinase -
  JMO16_RS08210 (JMO16_08210) - 1669799..1669945 (-) 147 WP_001792109.1 hypothetical protein -
  JMO16_RS08215 (JMO16_08215) comGF 1670042..1670539 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  JMO16_RS08220 (JMO16_08220) comGE 1670457..1670756 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  JMO16_RS08225 (JMO16_08225) comGD 1670743..1671189 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  JMO16_RS08230 (JMO16_08230) comGC 1671167..1671478 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  JMO16_RS08235 (JMO16_08235) - 1671492..1671929 (-) 438 Protein_1629 type II secretion system F family protein -
  JMO16_RS08240 (JMO16_08240) - 1672029..1673201 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  JMO16_RS08245 (JMO16_08245) - 1673253..1673894 (-) 642 Protein_1631 type II secretion system F family protein -
  JMO16_RS08250 (JMO16_08250) comGA 1673866..1674840 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  JMO16_RS08255 (JMO16_08255) - 1674892..1675515 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  JMO16_RS08260 (JMO16_08260) - 1675512..1675841 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=521071 JMO16_RS08225 WP_001788899.1 1670743..1671189(-) (comGD) [Staphylococcus aureus strain HL20835 isolate HL20835]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=521071 JMO16_RS08225 WP_001788899.1 1670743..1671189(-) (comGD) [Staphylococcus aureus strain HL20835 isolate HL20835]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1