Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   JEQ22_RS17180 Genome accession   NZ_CP066501
Coordinates   3447037..3447726 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain ID-A02     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3442037..3452726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ22_RS17145 (JEQ22_17035) - 3442235..3442717 (-) 483 WP_003151394.1 flagellar protein FlgN -
  JEQ22_RS17150 (JEQ22_17040) flgM 3442732..3442998 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  JEQ22_RS17155 (JEQ22_17045) - 3443068..3443487 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  JEQ22_RS17160 (JEQ22_17050) comFC 3443561..3444250 (-) 690 WP_217425079.1 phosphoribosyltransferase family protein Machinery gene
  JEQ22_RS17165 (JEQ22_17055) - 3444256..3444540 (-) 285 WP_017418816.1 competence protein ComFB -
  JEQ22_RS17170 (JEQ22_17060) comFA 3444598..3445983 (-) 1386 WP_237586808.1 DEAD/DEAH box helicase Machinery gene
  JEQ22_RS17175 (JEQ22_17065) - 3446091..3446939 (-) 849 WP_237586810.1 DegV family protein -
  JEQ22_RS17180 (JEQ22_17070) degU 3447037..3447726 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JEQ22_RS17185 (JEQ22_17075) degS 3447803..3448966 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  JEQ22_RS17190 (JEQ22_17080) - 3449189..3449836 (+) 648 WP_007407485.1 YigZ family protein -
  JEQ22_RS17195 (JEQ22_17085) - 3449841..3451034 (+) 1194 WP_151140083.1 LCP family protein -
  JEQ22_RS17200 (JEQ22_17090) - 3451134..3452210 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=520557 JEQ22_RS17180 WP_003219701.1 3447037..3447726(-) (degU) [Bacillus velezensis strain ID-A02]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=520557 JEQ22_RS17180 WP_003219701.1 3447037..3447726(-) (degU) [Bacillus velezensis strain ID-A02]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1