Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   JEQ22_RS17160 Genome accession   NZ_CP066501
Coordinates   3443561..3444250 (-) Length   229 a.a.
NCBI ID   WP_217425079.1    Uniprot ID   -
Organism   Bacillus velezensis strain ID-A02     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3438561..3449250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ22_RS17125 (JEQ22_17015) fliW 3438652..3439083 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  JEQ22_RS17130 (JEQ22_17020) - 3439113..3439682 (-) 570 WP_017418818.1 DUF6470 family protein -
  JEQ22_RS17135 (JEQ22_17025) flgL 3439773..3440690 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  JEQ22_RS17140 (JEQ22_17030) flgK 3440702..3442219 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  JEQ22_RS17145 (JEQ22_17035) - 3442235..3442717 (-) 483 WP_003151394.1 flagellar protein FlgN -
  JEQ22_RS17150 (JEQ22_17040) flgM 3442732..3442998 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  JEQ22_RS17155 (JEQ22_17045) - 3443068..3443487 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  JEQ22_RS17160 (JEQ22_17050) comFC 3443561..3444250 (-) 690 WP_217425079.1 phosphoribosyltransferase family protein Machinery gene
  JEQ22_RS17165 (JEQ22_17055) - 3444256..3444540 (-) 285 WP_017418816.1 competence protein ComFB -
  JEQ22_RS17170 (JEQ22_17060) comFA 3444598..3445983 (-) 1386 WP_237586808.1 DEAD/DEAH box helicase Machinery gene
  JEQ22_RS17175 (JEQ22_17065) - 3446091..3446939 (-) 849 WP_237586810.1 DegV family protein -
  JEQ22_RS17180 (JEQ22_17070) degU 3447037..3447726 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JEQ22_RS17185 (JEQ22_17075) degS 3447803..3448966 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25360.07 Da        Isoelectric Point: 8.4880

>NTDB_id=520555 JEQ22_RS17160 WP_217425079.1 3443561..3444250(-) (comFC) [Bacillus velezensis strain ID-A02]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=520555 JEQ22_RS17160 WP_217425079.1 3443561..3444250(-) (comFC) [Bacillus velezensis strain ID-A02]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTTTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGCGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598