Detailed information NTG0520370

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: JCP71_RS00050
• Genome accession: NZ_CP066480
• Coordinates: 12330..12842 (+)
• Length: 170 a.a.
• NCBI ID: WP_002288368.1
• Uniprot ID: -
• Organism: Enterococcus faecium strain Dallas 93_3
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1533..19391	12330..12842	within	0
IScluster/Tn	8809..11648	12330..12842	flank	682

Gene organization within MGE regions

Location: 1533..19391

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JCP71_RS00010 (JCP71_00010)	dnaN	1533..2663 (+)	1131	WP_002288361.1	DNA polymerase III subunit beta	-
JCP71_RS00015 (JCP71_00015)	yaaA	2892..3134 (+)	243	WP_002295251.1	S4 domain-containing protein YaaA	-
JCP71_RS00020 (JCP71_00020)	recF	3121..4245 (+)	1125	WP_002303989.1	DNA replication/repair protein RecF	-
JCP71_RS00025 (JCP71_00025)	gyrB	4242..6188 (+)	1947	WP_002288364.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
JCP71_RS00030 (JCP71_00030)	gyrA	6208..8679 (+)	2472	WP_002303991.1	DNA gyrase subunit A	-
JCP71_RS00035 (JCP71_00035)	-	8809..10104 (-)	1296	WP_002297218.1	ISL3-like element ISEfa11 family transposase	-
JCP71_RS00040 (JCP71_00040)	-	10353..11648 (-)	1296	WP_002297185.1	ISL3-like element ISEfa5 family transposase	-
JCP71_RS00045 (JCP71_00045)	rpsF	11981..12280 (+)	300	WP_002288366.1	30S ribosomal protein S6	-
JCP71_RS00050 (JCP71_00050)	ssb	12330..12842 (+)	513	WP_002288368.1	single-stranded DNA-binding protein	Machinery gene
JCP71_RS00055 (JCP71_00055)	rpsR	12868..13104 (+)	237	WP_002288370.1	30S ribosomal protein S18	-
JCP71_RS00060 (JCP71_00060)	-	13247..15220 (+)	1974	WP_002288371.1	DHH family phosphoesterase	-
JCP71_RS00065 (JCP71_00065)	rplI	15226..15678 (+)	453	WP_002288372.1	50S ribosomal protein L9	-
JCP71_RS00070 (JCP71_00070)	dnaB	15952..17319 (+)	1368	WP_002288373.1	replicative DNA helicase	-
JCP71_RS00075 (JCP71_00075)	-	18099..19391 (+)	1293	WP_002288375.1	adenylosuccinate synthase	-

Sequence

Protein

• Length: 170 a.a.
• Molecular weight: 18451.99 Da
• Isoelectric Point: 4.6742

>NTDB_id=520370 JCP71_RS00050 WP_002288368.1 12330..12842(+) (ssb) [Enterococcus faecium strain Dallas 93_3]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide

• Length: 513 bp

>NTDB_id=520370 JCP71_RS00050 WP_002288368.1 12330..12842(+) (ssb) [Enterococcus faecium strain Dallas 93_3]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	59.322	100	0.618
ssbA	Bacillus subtilis subsp. subtilis str. 168	56.983	100	0.6
ssbB	Bacillus subtilis subsp. subtilis str. 168	62.264	62.353	0.388