NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	K0V03_RS03085	Genome accession	NZ_CP080508
Coordinates	526957..527562 (-)	Length	201 a.a.
NCBI ID	WP_003229717.1	Uniprot ID	O05392
Organism	Bacillus subtilis strain HD15
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 521957..532562

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K0V03_RS03055 (K0V03_03055)	-	522770..523159 (+)	390	WP_031315243.1	TIGR04086 family membrane protein	-
K0V03_RS03060 (K0V03_03060)	yajC	523216..523482 (-)	267	WP_004398708.1	preprotein translocase subunit YajC	-
K0V03_RS03065 (K0V03_03065)	tgt	523519..524664 (-)	1146	WP_003229725.1	tRNA guanosine(34) transglycosylase Tgt	-
K0V03_RS03070 (K0V03_03070)	queA	524691..525719 (-)	1029	WP_003229723.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
K0V03_RS03075 (K0V03_03075)	yrzS	525749..525949 (-)	201	WP_003222669.1	DUF2905 domain-containing protein	-
K0V03_RS03080 (K0V03_03080)	ruvB	525942..526946 (-)	1005	WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
K0V03_RS03085 (K0V03_03085)	ruvA	526957..527562 (-)	606	WP_003229717.1	Holliday junction branch migration protein RuvA	Machinery gene
K0V03_RS03090 (K0V03_03090)	bofC	527701..528213 (-)	513	WP_014480438.1	sporulation cell-cell signaling protein BofC	-
K0V03_RS03095 (K0V03_03095)	csbX	528261..529568 (-)	1308	WP_085186634.1	MFS transporter	-
K0V03_RS03100 (K0V03_03100)	iolG	529639..530664 (-)	1026	WP_085186636.1	inositol 2-dehydrogenase	-
K0V03_RS03105 (K0V03_03105)	yrzF	530902..531549 (+)	648	WP_024572252.1	phosphotransferase	-
K0V03_RS03110 (K0V03_03110)	-	531595..531717 (-)	123	WP_003229707.1	hypothetical protein	-
K0V03_RS03115 (K0V03_03115)	-	531922..532248 (+)	327	WP_176217815.1	DUF5412 family protein	-
K0V03_RS03120 (K0V03_03120)	-	532255..532395 (+)	141	WP_004398683.1	hypothetical protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22584.08 Da Isoelectric Point: 5.4072

                                >NTDB_id=519983 K0V03_RS03085 WP_003229717.1 526957..527562(-) (ruvA) [Bacillus subtilis strain HD15]

MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP

KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL

EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=519983 K0V03_RS03085 WP_003229717.1 526957..527562(-) (ruvA) [Bacillus subtilis strain HD15]

GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA

GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAGGAAACGATTTTTACATACCATCATATCAGAGAGGATG

CTTTTTCGCTTTACGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG

AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCAGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT

GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC

CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT

GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC

AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	O05392

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408

Detailed information NTG0519983