Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   JEQ25_RS20015 Genome accession   NZ_CP066380
Coordinates   3808677..3808796 (+) Length   39 a.a.
NCBI ID   WP_041334633.1    Uniprot ID   A0AA96UN30
Organism   Bacillus subtilis strain ID-A05     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3803677..3813796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ25_RS19995 (JEQ25_19850) albG 3803840..3804541 (+) 702 WP_029726080.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  JEQ25_RS20000 (JEQ25_19855) ywhL 3804547..3805923 (-) 1377 WP_046381401.1 YncE family protein -
  JEQ25_RS20005 (JEQ25_19860) ywhK 3805963..3807318 (-) 1356 WP_046381402.1 YncE family protein -
  JEQ25_RS21920 - 3807315..3807545 (-) 231 WP_024572000.1 hypothetical protein -
  JEQ25_RS20010 (JEQ25_19865) rapF 3807548..3808693 (+) 1146 WP_086344441.1 response regulator aspartate phosphatase RapF Regulator
  JEQ25_RS20015 (JEQ25_19870) phrF 3808677..3808796 (+) 120 WP_041334633.1 phosphatase RapF inhibitor PhrF Regulator
  JEQ25_RS20020 (JEQ25_19875) - 3808894..3809356 (+) 463 Protein_3885 YbaK/EbsC family protein -
  JEQ25_RS20025 (JEQ25_19880) speB 3809388..3810260 (-) 873 WP_003227545.1 agmatinase -
  JEQ25_RS20030 (JEQ25_19885) speE 3810321..3811151 (-) 831 WP_003227543.1 spermidine synthase -
  JEQ25_RS20035 (JEQ25_19890) pbpG 3811354..3813429 (+) 2076 WP_029726084.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4215.16 Da        Isoelectric Point: 9.5675

>NTDB_id=519860 JEQ25_RS20015 WP_041334633.1 3808677..3808796(+) (phrF) [Bacillus subtilis strain ID-A05]
MKLKSKLLLSCLALCTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=519860 JEQ25_RS20015 WP_041334633.1 3808677..3808796(+) (phrF) [Bacillus subtilis strain ID-A05]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTATGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

97.436

100

0.974
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487