Detailed information NTG0519859

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: JEQ25_RS20010
• Genome accession: NZ_CP066380
• Coordinates: 3807548..3808693 (+)
• Length: 381 a.a.
• NCBI ID: WP_086344441.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain ID-A05
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3802548..3813693

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JEQ25_RS19990 (JEQ25_19845)	albF	3802563..3803843 (+)	1281	WP_046381400.1	pitrilysin family protein	-
JEQ25_RS19995 (JEQ25_19850)	albG	3803840..3804541 (+)	702	WP_029726080.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
JEQ25_RS20000 (JEQ25_19855)	ywhL	3804547..3805923 (-)	1377	WP_046381401.1	YncE family protein	-
JEQ25_RS20005 (JEQ25_19860)	ywhK	3805963..3807318 (-)	1356	WP_046381402.1	YncE family protein	-
JEQ25_RS21920	-	3807315..3807545 (-)	231	WP_024572000.1	hypothetical protein	-
JEQ25_RS20010 (JEQ25_19865)	rapF	3807548..3808693 (+)	1146	WP_086344441.1	response regulator aspartate phosphatase RapF	Regulator
JEQ25_RS20015 (JEQ25_19870)	phrF	3808677..3808796 (+)	120	WP_041334633.1	phosphatase RapF inhibitor PhrF	Regulator
JEQ25_RS20020 (JEQ25_19875)	-	3808894..3809356 (+)	463	Protein_3885	YbaK/EbsC family protein	-
JEQ25_RS20025 (JEQ25_19880)	speB	3809388..3810260 (-)	873	WP_003227545.1	agmatinase	-
JEQ25_RS20030 (JEQ25_19885)	speE	3810321..3811151 (-)	831	WP_003227543.1	spermidine synthase	-
JEQ25_RS20035 (JEQ25_19890)	pbpG	3811354..3813429 (+)	2076	WP_029726084.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45631.11 Da
• Isoelectric Point: 5.1503

>NTDB_id=519859 JEQ25_RS20010 WP_086344441.1 3807548..3808693(+) (rapF) [Bacillus subtilis strain ID-A05]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=519859 JEQ25_RS20010 WP_086344441.1 3807548..3808693(+) (rapF) [Bacillus subtilis strain ID-A05]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAAGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGGAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-290)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	99.475	100	0.995
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572