Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EHR_RS04440 Genome accession   NC_018081
Coordinates   913375..913887 (-) Length   170 a.a.
NCBI ID   WP_010720497.1    Uniprot ID   A0A1V8XB86
Organism   Enterococcus hirae ATCC 9790     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 908375..918887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHR_RS14595 (EHR_04825) - 908827..908949 (+) 123 WP_014834375.1 hypothetical protein -
  EHR_RS04415 (EHR_04830) - 908998..909489 (+) 492 WP_010736779.1 hypothetical protein -
  EHR_RS04420 (EHR_04835) rplI 909882..910334 (-) 453 WP_010720494.1 50S ribosomal protein L9 -
  EHR_RS04425 (EHR_04840) - 910340..912319 (-) 1980 WP_010736778.1 DHH family phosphoesterase -
  EHR_RS04430 (EHR_04845) - 912558..912965 (+) 408 WP_010736777.1 hypothetical protein -
  EHR_RS04435 (EHR_04850) rpsR 913113..913349 (-) 237 WP_002288370.1 30S ribosomal protein S18 -
  EHR_RS04440 (EHR_04855) ssb 913375..913887 (-) 513 WP_010720497.1 single-stranded DNA-binding protein Machinery gene
  EHR_RS04445 (EHR_04860) rpsF 913939..914238 (-) 300 WP_010720498.1 30S ribosomal protein S6 -
  EHR_RS04450 (EHR_04865) gyrA 914638..917136 (-) 2499 WP_010720499.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18703.22 Da        Isoelectric Point: 4.5567

>NTDB_id=51977 EHR_RS04440 WP_010720497.1 913375..913887(-) (ssb) [Enterococcus hirae ATCC 9790]
MINNVVLVGRLTKDPDLRYTSSGTAVATFTLAVNRNFTSQNGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQLLESRAASENRQQTGGYQSSGQSTNDFGGSNNYNQTSQSSNGMPDFDRDNSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=51977 EHR_RS04440 WP_010720497.1 913375..913887(-) (ssb) [Enterococcus hirae ATCC 9790]
TTGATTAATAATGTTGTACTAGTTGGACGTCTAACTAAAGATCCGGATTTACGATATACATCAAGTGGCACTGCAGTAGC
AACGTTTACTTTAGCTGTTAATCGTAATTTTACTAGCCAAAACGGCAATCGTGAGGCTGACTTTATTAATTGTGTGATTT
GGCGTAAATCAGCAGAGACATTAGCAAACTATGCTCGTAAGGGGACTCTTTTAGGAGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTAACAGAAGTAGTTGCTGAAAACTTCCAATTATTGGAAAGTCGTGC
TGCATCTGAAAATCGTCAACAAACTGGCGGTTACCAAAGCTCTGGTCAATCGACAAATGATTTTGGCGGAAGTAATAACT
ATAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTTGATCGTGACAATTCTGATCCATTTGGTTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.628

100

0.624
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.542

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376

Multiple sequence alignment