Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   JEQ24_RS13520 Genome accession   NZ_CP066379
Coordinates   2701161..2701496 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain ID-A04     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2696161..2706496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ24_RS13500 (JEQ24_13350) gcvT 2696767..2697867 (-) 1101 WP_017418134.1 glycine cleavage system aminomethyltransferase GcvT -
  JEQ24_RS13505 (JEQ24_13355) - 2698291..2699961 (+) 1671 WP_038461530.1 SNF2-related protein -
  JEQ24_RS13510 (JEQ24_13360) - 2699983..2700777 (+) 795 WP_014418368.1 YqhG family protein -
  JEQ24_RS13515 (JEQ24_13365) sinI 2700954..2701127 (+) 174 WP_014418369.1 anti-repressor SinI family protein Regulator
  JEQ24_RS13520 (JEQ24_13370) sinR 2701161..2701496 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  JEQ24_RS13525 (JEQ24_13375) - 2701544..2702329 (-) 786 WP_007408329.1 TasA family protein -
  JEQ24_RS13530 (JEQ24_13380) - 2702394..2702978 (-) 585 WP_022552967.1 signal peptidase I -
  JEQ24_RS13535 (JEQ24_13385) tapA 2702950..2703621 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  JEQ24_RS13540 (JEQ24_13390) - 2703880..2704209 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  JEQ24_RS13545 (JEQ24_13395) - 2704250..2704429 (-) 180 WP_022552966.1 YqzE family protein -
  JEQ24_RS13550 (JEQ24_13400) comGG 2704486..2704863 (-) 378 WP_022552965.1 competence type IV pilus minor pilin ComGG Machinery gene
  JEQ24_RS13555 (JEQ24_13405) comGF 2704864..2705259 (-) 396 WP_046559876.1 competence type IV pilus minor pilin ComGF -
  JEQ24_RS13560 (JEQ24_13410) comGE 2705273..2705587 (-) 315 WP_021494312.1 competence type IV pilus minor pilin ComGE Machinery gene
  JEQ24_RS13565 (JEQ24_13415) comGD 2705571..2706008 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  JEQ24_RS13570 (JEQ24_13420) comGC 2705998..2706306 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=519746 JEQ24_RS13520 WP_003153104.1 2701161..2701496(+) (sinR) [Bacillus velezensis strain ID-A04]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=519746 JEQ24_RS13520 WP_003153104.1 2701161..2701496(+) (sinR) [Bacillus velezensis strain ID-A04]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991