Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PADK2_RS09520 Genome accession   NC_018080
Coordinates   2048477..2049112 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa DK2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2043477..2054112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PADK2_RS09505 (PADK2_09425) - 2044183..2045427 (+) 1245 WP_003118085.1 lipoprotein-releasing ABC transporter permease subunit -
  PADK2_RS09510 (PADK2_09430) - 2045515..2046048 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  PADK2_RS09515 (PADK2_09435) comA 2046179..2048404 (+) 2226 WP_003119806.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PADK2_RS09520 (PADK2_09440) exbB 2048477..2049112 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PADK2_RS09525 (PADK2_09445) - 2049109..2049549 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  PADK2_RS09530 (PADK2_09450) lpxK 2049549..2050547 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  PADK2_RS09535 (PADK2_09455) - 2050585..2050770 (+) 186 WP_003091157.1 Trm112 family protein -
  PADK2_RS09540 (PADK2_09460) kdsB 2050770..2051534 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PADK2_RS09545 (PADK2_09465) - 2051534..2051998 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  PADK2_RS09550 (PADK2_09470) murB 2051995..2053014 (+) 1020 WP_003118084.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=51948 PADK2_RS09520 WP_003091163.1 2048477..2049112(+) (exbB) [Pseudomonas aeruginosa DK2]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=51948 PADK2_RS09520 WP_003091163.1 2048477..2049112(+) (exbB) [Pseudomonas aeruginosa DK2]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGTA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment