Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   Xdur_RS17555 Genome accession   NZ_CP066343
Coordinates   4010615..4010734 (-) Length   39 a.a.
NCBI ID   WP_005915819.1    Uniprot ID   A0A7S6YV99
Organism   Xanthomonas citri pv. durantae strain LMG696     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4005615..4015734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Xdur_RS17540 (Xdur_017495) - 4006778..4008391 (+) 1614 WP_003488599.1 HAMP domain-containing sensor histidine kinase -
  Xdur_RS17545 (Xdur_017500) - 4008716..4010111 (+) 1396 Protein_3435 sigma-54 dependent transcriptional regulator -
  Xdur_RS17550 (Xdur_017505) - 4010316..4010483 (-) 168 WP_015463523.1 hypothetical protein -
  Xdur_RS17555 (Xdur_017510) pilB 4010615..4010734 (-) 120 WP_005915819.1 hypothetical protein Machinery gene
  Xdur_RS17560 (Xdur_017515) pilB 4011228..4012964 (-) 1737 WP_011052125.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Xdur_RS17565 (Xdur_017520) - 4013028..4013348 (-) 321 WP_258383178.1 pilin -
  Xdur_RS17575 (Xdur_017530) - 4014668..4014805 (-) 138 Protein_3441 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  Xdur_RS17580 (Xdur_017535) - 4014915..4015355 (-) 441 WP_015471735.1 pilin -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4178.84 Da        Isoelectric Point: 9.0113

>NTDB_id=519402 Xdur_RS17555 WP_005915819.1 4010615..4010734(-) (pilB) [Xanthomonas citri pv. durantae strain LMG696]
MQIAEAAQAIGIRDLRQSALMKAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 120 bp        

>NTDB_id=519402 Xdur_RS17555 WP_005915819.1 4010615..4010734(-) (pilB) [Xanthomonas citri pv. durantae strain LMG696]
ATGCAGATCGCCGAGGCCGCACAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATGAAGGCTGCGCACGGGGT
GACCAGCCTGGCGGAGATCAATCGTGTGACGAAGGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S6YV99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baylyi ADP1

51.282

100

0.513
  pilB Acinetobacter baumannii D1279779

48.718

100

0.487
  pilB Vibrio cholerae strain A1552

45.714

89.744

0.41
  pilB Legionella pneumophila strain ERS1305867

38.462

100

0.385