Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GI364_RS24190 Genome accession   NZ_CP066339
Coordinates   5179607..5180095 (-) Length   162 a.a.
NCBI ID   WP_198851699.1    Uniprot ID   A0A7T5EUJ9
Organism   Alicyclobacillus sp. SO9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5174607..5185095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GI364_RS24155 (GI364_24400) - 5174754..5175452 (-) 699 WP_198851693.1 response regulator -
  GI364_RS24160 (GI364_24405) - 5175508..5175942 (-) 435 WP_198851694.1 hypothetical protein -
  GI364_RS24165 (GI364_24410) dnaB 5175953..5177332 (-) 1380 WP_198851695.1 replicative DNA helicase -
  GI364_RS24170 (GI364_24415) rplI 5177358..5177801 (-) 444 WP_198851696.1 50S ribosomal protein L9 -
  GI364_RS24175 (GI364_24420) - 5177895..5178803 (-) 909 WP_198851697.1 DUF2232 domain-containing protein -
  GI364_RS24180 (GI364_24425) - 5178811..5179107 (-) 297 WP_233096216.1 MazG-like family protein -
  GI364_RS24185 (GI364_24430) rpsR 5179320..5179550 (-) 231 WP_198854197.1 30S ribosomal protein S18 -
  GI364_RS24190 (GI364_24435) ssbA 5179607..5180095 (-) 489 WP_198851699.1 single-stranded DNA-binding protein Machinery gene
  GI364_RS24195 (GI364_24440) rpsF 5180115..5180402 (-) 288 WP_198851700.1 30S ribosomal protein S6 -
  GI364_RS24200 (GI364_24445) ychF 5180716..5181816 (-) 1101 WP_198851701.1 redox-regulated ATPase YchF -
  GI364_RS24205 (GI364_24450) - 5182204..5182377 (+) 174 WP_198851702.1 hypothetical protein -
  GI364_RS24210 (GI364_24455) - 5182406..5182612 (-) 207 WP_198851703.1 DUF951 domain-containing protein -
  GI364_RS24215 (GI364_24460) - 5182788..5183378 (-) 591 WP_198851704.1 hypothetical protein -
  GI364_RS24220 (GI364_24465) yyaC 5183484..5184107 (+) 624 WP_233095946.1 spore protease YyaC -
  GI364_RS24225 (GI364_24470) - 5184201..5184698 (-) 498 WP_198851705.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 18123.00 Da        Isoelectric Point: 4.7066

>NTDB_id=519384 GI364_RS24190 WP_198851699.1 5179607..5180095(-) (ssbA) [Alicyclobacillus sp. SO9]
MLNRIVLIGRLTQDPDLRYTNSGTAVANFTLAVDRMRANQNGERETDFVPIVVWQKQAEICAQYLHKGRQAAVDGRLQIR
SFENREGQKVKIAEVVAESVRFLDRGDPQNSGTMYGSQQKPSGSGTSSDNRQAEPAKSQRFEDDPFADDSQTIDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=519384 GI364_RS24190 WP_198851699.1 5179607..5180095(-) (ssbA) [Alicyclobacillus sp. SO9]
ATGCTGAATCGGATTGTTTTAATTGGTAGACTTACGCAGGATCCTGACCTTCGCTACACCAACAGCGGGACAGCTGTGGC
AAACTTCACACTGGCTGTGGACCGTATGCGGGCTAACCAGAACGGGGAGAGGGAAACAGATTTCGTCCCTATCGTTGTGT
GGCAGAAACAAGCTGAGATTTGCGCTCAATATCTCCACAAAGGTCGACAAGCGGCCGTAGATGGCAGACTGCAAATTAGA
AGCTTTGAAAATCGAGAGGGTCAAAAAGTCAAAATCGCAGAAGTGGTGGCGGAGTCAGTCCGCTTTCTTGACCGGGGTGA
TCCACAGAACTCTGGCACCATGTATGGCTCCCAACAGAAGCCGTCGGGCTCAGGGACCAGTTCAGATAACAGACAGGCAG
AGCCTGCCAAGTCTCAGCGATTTGAAGACGATCCATTTGCTGATGATAGTCAAACAATTGATATTTCTGATGATGATTTG
CCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T5EUJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.429

100

0.556
  ssb Latilactobacillus sakei subsp. sakei 23K

45.977

100

0.494
  ssb Neisseria meningitidis MC58

33.333

100

0.364