Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JFU10_RS06045 Genome accession   NZ_CP066337
Coordinates   1292381..1293025 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain Mr12     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1287381..1298025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFU10_RS06010 - 1288566..1288997 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  JFU10_RS06015 - 1288997..1289338 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  JFU10_RS06020 - 1289331..1290812 (+) 1482 WP_166705774.1 Na+/H+ antiporter subunit D -
  JFU10_RS06025 - 1290818..1291294 (+) 477 WP_071392239.1 Na+/H+ antiporter subunit E -
  JFU10_RS06030 - 1291294..1291578 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  JFU10_RS06035 mnhG 1291562..1291936 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  JFU10_RS06040 - 1291976..1292359 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  JFU10_RS06045 comA 1292381..1293025 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  JFU10_RS06050 comP 1293106..1295397 (-) 2292 WP_039254056.1 histidine kinase Regulator
  JFU10_RS06055 comX 1295409..1295573 (-) 165 WP_007613432.1 competence pheromone ComX -
  JFU10_RS06060 - 1295573..1296484 (-) 912 WP_031378407.1 polyprenyl synthetase family protein -
  JFU10_RS06065 degQ 1296636..1296776 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  JFU10_RS06070 - 1297242..1297583 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=519313 JFU10_RS06045 WP_003152052.1 1292381..1293025(-) (comA) [Bacillus velezensis strain Mr12]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=519313 JFU10_RS06045 WP_003152052.1 1292381..1293025(-) (comA) [Bacillus velezensis strain Mr12]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACTCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGTACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864