Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   JET17_RS07650 Genome accession   NZ_CP066306
Coordinates   1664915..1667128 (+) Length   737 a.a.
NCBI ID   WP_012313419.1    Uniprot ID   -
Organism   Pseudomonas putida strain BR-PH17     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1659915..1672128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JET17_RS07630 (JET17_07630) - 1661798..1662421 (+) 624 WP_012313415.1 glutathione S-transferase -
  JET17_RS07635 (JET17_07635) - 1662554..1663486 (+) 933 WP_012313416.1 ABC transporter ATP-binding protein -
  JET17_RS07640 (JET17_07640) - 1663483..1664262 (+) 780 WP_012313417.1 ABC transporter permease -
  JET17_RS07645 (JET17_07645) - 1664146..1664772 (-) 627 WP_012313418.1 DUF2062 domain-containing protein -
  JET17_RS07650 (JET17_07650) comA 1664915..1667128 (+) 2214 WP_012313419.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JET17_RS07655 (JET17_07655) exbB 1667240..1667875 (+) 636 WP_012313420.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JET17_RS07660 (JET17_07660) - 1667872..1668306 (+) 435 WP_012313421.1 ExbD/TolR family protein -
  JET17_RS07665 (JET17_07665) lpxK 1668306..1669316 (+) 1011 WP_012313422.1 tetraacyldisaccharide 4'-kinase -
  JET17_RS07670 (JET17_07670) - 1669361..1669546 (+) 186 WP_003247142.1 Trm112 family protein -
  JET17_RS07675 (JET17_07675) kdsB 1669543..1670307 (+) 765 WP_012313423.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JET17_RS07680 (JET17_07680) - 1670307..1670771 (+) 465 WP_012313424.1 low molecular weight protein-tyrosine-phosphatase -
  JET17_RS07685 (JET17_07685) murB 1670768..1671787 (+) 1020 WP_012313425.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79699.64 Da        Isoelectric Point: 9.1576

>NTDB_id=519186 JET17_RS07650 WP_012313419.1 1664915..1667128(+) (comA) [Pseudomonas putida strain BR-PH17]
MRTGMFALALGLLCLGVLPELPSVGWLWLLLCGGLFCLCTRLWPLGCCVLGMCWACWSAQQALDDRLAPSLDGRTLWLEG
RVVGLPTNTLSGVRFELEQPRSRRAALPKRLQLHWFDGPPVRAGERWRLAATLQRPAGLLNPHGPDREAQLLAKRIGATG
TVKAGHVLDTGQPGWRDALRQRLLSVAAHGREAALVALVLGDGAGLAREDWQALQATGTVHLLVISGQHIGLVAGLLYAL
VAGLARWGLWPQALPWLPCACGLALGAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGALFPLLLALIGVLVAEPL
APLLPGFWLSFAAVATLVYCFSSRLGRWRPWQGWTRAQWVIAIGLLPVLIATGLPVSLSAPLANLLAVPWISLAVLPLAL
LGTLLLPLAGVGEGLLWLAGGLLDVLFRLLAWVAHWRPAWLPPALPVWAWLMVCLGALLVLLPSGVPLRSLGGAMLLALW
VPREAVPQGQVEVWQLDVGQGLAVLLRTQNHSLLYDAGPARGDSDLGERVVLPTLHKLGVKRLDIMLISHAHADHAGGAP
AVYRGLPVVRVLGGEVLEDLALQPCASDEQWEWDGVRFSLWHWAQGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AAHATPRIDWLQSPHHGSRSSSTEAFIRATAPRGVLISRGRNNGFGHPHVQVIERYRRHGVAIHDTAVEGALRLVLGNHG
EVEGVRGQKRFWRGSVP

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=519186 JET17_RS07650 WP_012313419.1 1664915..1667128(+) (comA) [Pseudomonas putida strain BR-PH17]
ATGCGCACAGGGATGTTTGCGCTGGCGCTCGGGCTGTTGTGCCTGGGTGTCCTTCCTGAATTGCCATCGGTCGGGTGGCT
GTGGCTGCTGCTCTGCGGGGGGCTGTTTTGCCTGTGCACACGCCTGTGGCCGCTGGGCTGCTGCGTGCTGGGTATGTGCT
GGGCTTGCTGGTCGGCGCAGCAGGCACTGGATGATCGCCTGGCCCCAAGCCTGGATGGCCGCACGCTGTGGCTGGAGGGC
AGGGTGGTCGGCTTGCCGACCAACACGCTGAGTGGTGTGCGCTTTGAGCTGGAACAGCCTCGCTCGCGCCGCGCTGCGTT
GCCCAAGCGCCTGCAATTGCATTGGTTCGATGGCCCGCCGGTGCGTGCTGGCGAGCGCTGGCGCCTGGCTGCTACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCTCATGGTCCGGACCGGGAGGCACAGTTGTTGGCCAAGCGCATCGGCGCCACTGGC
ACGGTCAAGGCCGGCCATGTGCTGGATACCGGGCAGCCGGGGTGGCGTGACGCACTGCGCCAGCGCTTGTTGAGCGTCGC
CGCGCATGGCCGGGAAGCGGCCCTTGTCGCATTGGTGCTCGGCGATGGCGCCGGCCTGGCCCGTGAGGACTGGCAAGCGC
TGCAGGCCACGGGCACGGTACACCTGTTGGTGATCTCGGGGCAGCACATCGGCCTGGTCGCCGGCCTGCTTTACGCCTTG
GTCGCGGGCCTGGCGCGCTGGGGCCTGTGGCCTCAGGCTCTACCTTGGTTGCCGTGTGCGTGTGGCCTGGCACTGGGTGC
GGCGCTGGCCTATGGCTGGCTGGCCGGTGCGGGGGTGCCGGTGCAGCGCGCCTGCCTGATGCTGGCGGTGGTTCTGCTCT
GGCGCCTGCGCTTTCGCCATCTTGGGGCGCTGTTTCCTTTGCTGCTGGCACTTATCGGGGTGCTGGTCGCCGAGCCCCTG
GCGCCGCTGCTGCCAGGGTTCTGGCTGTCGTTTGCGGCGGTGGCGACCCTGGTCTACTGCTTCAGTTCACGTCTGGGCCG
ATGGCGGCCCTGGCAAGGGTGGACCCGCGCCCAGTGGGTGATCGCCATCGGCCTGCTGCCGGTACTGATTGCGACCGGTC
TGCCGGTCAGTCTGAGTGCGCCACTGGCCAACTTGCTGGCAGTGCCGTGGATCAGCCTCGCGGTATTGCCCTTGGCGCTG
CTTGGAACGTTGCTGCTGCCGTTGGCAGGGGTAGGTGAAGGTCTGTTGTGGTTGGCGGGCGGGCTGCTGGATGTCTTGTT
CCGGTTGCTGGCTTGGGTAGCGCATTGGCGCCCGGCATGGCTACCGCCTGCTTTGCCGGTCTGGGCCTGGCTGATGGTCT
GCCTGGGCGCGTTGCTGGTGCTGCTGCCGTCCGGTGTACCTCTACGCAGCCTGGGCGGGGCCATGCTGCTGGCATTGTGG
GTGCCCAGGGAGGCTGTGCCGCAGGGGCAGGTGGAGGTCTGGCAGTTGGATGTCGGGCAGGGCTTGGCGGTATTGCTGCG
CACGCAAAATCACAGTCTGCTTTACGACGCCGGCCCGGCGCGGGGTGATAGTGATCTGGGTGAGCGGGTGGTGTTGCCGA
CCCTGCACAAGTTGGGCGTAAAGCGCTTGGACATCATGCTTATCAGTCATGCCCATGCCGACCATGCGGGTGGCGCGCCG
GCCGTCTACCGTGGGTTGCCGGTGGTCCGTGTGCTGGGCGGCGAAGTGTTGGAGGACCTTGCACTGCAGCCTTGTGCCAG
TGATGAGCAGTGGGAATGGGATGGCGTGCGCTTTTCGCTGTGGCATTGGGCCCAGGGGCAGAGCAGCAACGATCGCTCTT
GCGTGCTGCTGGTCGAGGCACAGGGGGAGCGGCTGCTATTGGCAGGCGATATGGAGGCGGGGGCCGAGCGCGCATGGTTG
GCGGCCCACGCGACGCCTCGTATCGATTGGCTGCAGTCACCGCACCATGGCAGCCGTAGTTCCTCGACCGAGGCATTCAT
CCGCGCCACGGCGCCGCGCGGCGTGCTGATTTCGCGGGGGCGTAACAACGGTTTTGGGCATCCGCATGTGCAGGTGATCG
AGCGGTATCGGCGGCATGGGGTGGCCATTCACGATACGGCGGTAGAGGGGGCGTTGCGGTTGGTGCTGGGCAACCATGGC
GAGGTGGAGGGGGTGCGGGGGCAGAAACGCTTTTGGCGGGGCAGTGTGCCGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Domain of unknown function (DUF4131) (DUF4131)

(20-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.357

97.422

0.569
  comA Ralstonia pseudosolanacearum GMI1000

33.842

100

0.361