Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JET17_RS07655 Genome accession   NZ_CP066306
Coordinates   1667240..1667875 (+) Length   211 a.a.
NCBI ID   WP_012313420.1    Uniprot ID   -
Organism   Pseudomonas putida strain BR-PH17     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1662240..1672875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JET17_RS07635 (JET17_07635) - 1662554..1663486 (+) 933 WP_012313416.1 ABC transporter ATP-binding protein -
  JET17_RS07640 (JET17_07640) - 1663483..1664262 (+) 780 WP_012313417.1 ABC transporter permease -
  JET17_RS07645 (JET17_07645) - 1664146..1664772 (-) 627 WP_012313418.1 DUF2062 domain-containing protein -
  JET17_RS07650 (JET17_07650) comA 1664915..1667128 (+) 2214 WP_012313419.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JET17_RS07655 (JET17_07655) exbB 1667240..1667875 (+) 636 WP_012313420.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JET17_RS07660 (JET17_07660) - 1667872..1668306 (+) 435 WP_012313421.1 ExbD/TolR family protein -
  JET17_RS07665 (JET17_07665) lpxK 1668306..1669316 (+) 1011 WP_012313422.1 tetraacyldisaccharide 4'-kinase -
  JET17_RS07670 (JET17_07670) - 1669361..1669546 (+) 186 WP_003247142.1 Trm112 family protein -
  JET17_RS07675 (JET17_07675) kdsB 1669543..1670307 (+) 765 WP_012313423.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JET17_RS07680 (JET17_07680) - 1670307..1670771 (+) 465 WP_012313424.1 low molecular weight protein-tyrosine-phosphatase -
  JET17_RS07685 (JET17_07685) murB 1670768..1671787 (+) 1020 WP_012313425.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22863.12 Da        Isoelectric Point: 7.3616

>NTDB_id=519187 JET17_RS07655 WP_012313420.1 1667240..1667875(+) (exbB) [Pseudomonas putida strain BR-PH17]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEESASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLASGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=519187 JET17_RS07655 WP_012313420.1 1667240..1667875(+) (exbB) [Pseudomonas putida strain BR-PH17]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCAATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTTACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAGCTCACCAGTGACAAGCTCAAGGCTCTGCGCGCCGATTCGCCCCTGGGTGAGATTCTGGCTGCGGGCCTGGCCAAC
TCGCGCCATGGCCGTGAAATCATGAAAGAGTGCATCGAGGAGTCTGCCTCGCGGGTCATCCATGAACTGGAACGCTATAT
CAGCACCCTCGGTACCATCGCTGCGATGGCCCCGCTGCTCGGGCTGCTGGGTACTGTGCTGGGCATGATCGATATCTTCA
GCGCCTTCATGGGGTCGCAGATGACCGCCAATGCCGCAGTGCTGGCCAGTGGTATCTCCAAGGCTCTTGTCACTACGGCG
GCCGGCCTGATGGTCGGCATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGGCGCATCGACGAACTGGTGGTGGGCAT
GGAGCAAGAGGCGATCAAGCTGGTGGAGGTCATCCAAGGCGACCGCGAAGTCGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.517

100

0.815