Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   IGS65_RS05800 Genome accession   NZ_CP066294
Coordinates   1189879..1190913 (-) Length   344 a.a.
NCBI ID   WP_002286148.1    Uniprot ID   -
Organism   Streptococcus mutans strain 27-3     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1184879..1195913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS05765 (IGS65_005765) - 1185792..1186094 (-) 303 WP_002262601.1 YlxQ-related RNA-binding protein -
  IGS65_RS05770 (IGS65_005770) - 1186087..1186383 (-) 297 WP_002263922.1 YlxR family protein -
  IGS65_RS05775 (IGS65_005775) nusA 1186401..1187594 (-) 1194 WP_192072077.1 transcription termination factor NusA -
  IGS65_RS05780 (IGS65_005780) rimP 1187630..1188121 (-) 492 WP_002267543.1 ribosome maturation factor RimP -
  IGS65_RS05790 (IGS65_005790) trmB 1188393..1189028 (-) 636 WP_002265651.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  IGS65_RS05795 (IGS65_005795) - 1189038..1189820 (-) 783 WP_002273963.1 phosphotransferase family protein -
  IGS65_RS05800 (IGS65_005800) pptB 1189879..1190913 (-) 1035 WP_002286148.1 ABC transporter permease Regulator
  IGS65_RS05805 (IGS65_005805) pptA 1190916..1191641 (-) 726 WP_002262608.1 ABC transporter ATP-binding protein Regulator
  IGS65_RS05810 (IGS65_005810) - 1191706..1192125 (+) 420 WP_002262609.1 HIT family protein -
  IGS65_RS05815 (IGS65_005815) - 1192122..1192406 (+) 285 WP_002262610.1 hypothetical protein -
  IGS65_RS05820 (IGS65_005820) brpA 1192586..1193806 (-) 1221 WP_002267779.1 biofilm formation/cell division transcriptional regulator BrpA -
  IGS65_RS05825 (IGS65_005825) tsaE 1194137..1194580 (-) 444 WP_002272923.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40570.00 Da        Isoelectric Point: 10.6270

>NTDB_id=519132 IGS65_RS05800 WP_002286148.1 1189879..1190913(-) (pptB) [Streptococcus mutans strain 27-3]
MKAIFTKRRFHFINQCSRYLRYVFNDHFVLVLIFLLGFLMVQYSQLLKHFPANHWPIMLVLALVVLTLLFWGNIATYLEP
ADQQFLLVREKDIVALIQKAKRRALFFWGTWQTLLLLILAPLFLRLGLALFSFLFLLLFLLFLKGLIIEKKSRAFLKQKG
LNWDHALNQEKKRQQAILKFFSLFTNVKGISNSVKRRAYLDFGTKLLPKETHKAWTNLYLRAFLRSGDYLGLTFRLGFLS
LLSLLFIDNPLMSAGLALLFNYLLLFQLLALYKHYDYQYLTALFPISKAEKKANLKQLLRVILYFLTAVEFCFSFSWQKT
IILLLAMLCLNEVYLPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=519132 IGS65_RS05800 WP_002286148.1 1189879..1190913(-) (pptB) [Streptococcus mutans strain 27-3]
ATGAAGGCAATTTTTACAAAAAGACGATTCCATTTTATCAATCAATGCAGTCGATACCTTCGCTATGTTTTTAATGATCA
TTTTGTTTTAGTATTGATTTTTTTACTAGGTTTTCTTATGGTACAGTATAGTCAACTGTTAAAACATTTTCCGGCTAATC
ATTGGCCCATCATGCTTGTTTTAGCGTTAGTTGTCTTGACCTTACTATTTTGGGGAAATATAGCGACTTATTTGGAACCA
GCGGATCAGCAATTTCTTTTGGTCAGGGAAAAGGACATTGTTGCTTTAATCCAAAAGGCTAAAAGACGAGCTCTTTTCTT
TTGGGGAACTTGGCAGACACTCTTGCTTCTTATTTTGGCACCTCTTTTTTTACGTTTGGGACTGGCACTTTTTTCTTTTC
TTTTTTTGCTCCTTTTTTTGCTCTTTTTAAAGGGATTAATCATTGAAAAAAAAAGCAGAGCTTTTTTGAAGCAGAAAGGA
CTGAACTGGGATCATGCTCTTAATCAAGAGAAAAAACGGCAGCAGGCAATTTTAAAATTCTTTTCACTTTTTACCAATGT
TAAGGGAATTTCAAACAGCGTTAAGCGACGGGCTTATTTGGATTTTGGGACAAAATTATTGCCGAAGGAGACTCATAAAG
CGTGGACTAATCTTTATTTAAGAGCTTTTTTACGCAGTGGCGATTATTTAGGACTGACCTTTCGTTTAGGTTTTTTAAGT
CTTTTAAGTCTTCTTTTTATTGATAATCCTTTAATGTCAGCAGGTTTAGCGCTCCTTTTTAATTACCTCTTGCTTTTTCA
ATTGTTGGCTCTTTATAAACATTATGATTATCAATATTTAACAGCCCTTTTTCCCATTTCAAAAGCGGAGAAGAAGGCTA
ATTTGAAACAGTTATTGCGTGTTATTCTATATTTTTTAACAGCTGTTGAATTTTGTTTTAGCTTTTCATGGCAAAAGACA
ATTATTTTACTTTTGGCAATGCTTTGTCTCAATGAAGTTTATCTGCCTTACAAAATAAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

51.453

100

0.515

  pptB Streptococcus thermophilus LMD-9

50.872

100

0.509