Detailed information NTG0519021

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: I9H06_RS03605
• Genome accession: NZ_CP066267
• Coordinates: 761662..763002 (-)
• Length: 446 a.a.
• NCBI ID: WP_122347869.1
• Uniprot ID: -
• Organism: Pseudomonas tremae strain PA-1-12B
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 756662..768002

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I9H06_RS03595 (I9H06_03600)	-	759686..760801 (-)	1116	WP_122323612.1	efflux RND transporter periplasmic adaptor subunit	-
I9H06_RS03600 (I9H06_03605)	-	760883..761500 (-)	618	WP_122347870.1	TetR/AcrR family transcriptional regulator	-
I9H06_RS03605 (I9H06_03610)	pilR	761662..763002 (-)	1341	WP_122347869.1	sigma-54 dependent transcriptional regulator	Regulator
I9H06_RS03610 (I9H06_03615)	pilS	763005..764597 (-)	1593	WP_024669785.1	ATP-binding protein	Regulator
I9H06_RS03615 (I9H06_03620)	-	764587..764826 (-)	240	WP_268949329.1	PP0621 family protein	-
I9H06_RS03620 (I9H06_03625)	-	764965..765987 (-)	1023	WP_005895284.1	outer membrane protein assembly factor BamD	-
I9H06_RS03625 (I9H06_03630)	rluD	766137..767099 (+)	963	WP_005895286.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
I9H06_RS03630 (I9H06_03635)	pgeF	767096..767824 (+)	729	WP_122323614.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49863.94 Da
• Isoelectric Point: 6.5800

>NTDB_id=519021 I9H06_RS03605 WP_122347869.1 761662..763002(-) (pilR) [Pseudomonas tremae strain PA-1-12B]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHEWLAREPFDMCLTDMRLPDGNGLELVQHIQQGYPQVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVNSALSLPSSPPPVRSVDSRLLGESPPMRSLRTQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRNEKPFVPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHNGTLFLDEVADL
PLAMQVKLLRAIQEKAIRSVGGQQEQVVDVRILCATHKDLAVEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQLAAS
VLRRLAGNGAQPVARLHAQALETLKSYRFPGNVRELENMLERAYTLCENAEIHASDLRLAECASSQEQNGPSLADIDNLE
DYLESIERKLILQALEETRWNRTAAADRLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=519021 I9H06_RS03605 WP_122347869.1 761662..763002(-) (pilR) [Pseudomonas tremae strain PA-1-12B]
ATGAGCCAACGGCAAAAGATTCTGATCGTCGACGATGAGCCGGATATTCGTGAGCTCCTGGAGATCACCCTGGGGCGCAT
GAAACTCGATACCCGCAGCGCTCGCAATGTTGCCGAAGCGCACGAATGGCTGGCGCGTGAGCCGTTCGACATGTGCCTGA
CCGACATGCGCCTGCCTGACGGCAATGGCCTTGAACTGGTGCAGCATATCCAGCAAGGCTACCCGCAGGTGCCCGTGGCA
ATGATCACGGCTCACGGCAACCTCGACACGGCGATCCATGCGCTCAAGGCCGGAGCTTTTGATTTTGTTACCAAACCTGT
CGACCTCAACCGACTGCGTGAGCTGGTCAACAGCGCCCTGAGCCTGCCTTCCAGCCCGCCACCGGTGCGCAGTGTCGACA
GCCGCCTGTTGGGCGAGTCGCCACCGATGCGCAGTCTGCGCACGCAAATCGGCAAGCTGGCACGCAGTCAGGCACCGATC
TACATCAGTGGCGAATCGGGCAGCGGCAAGGAACTGGTCGCGCGACTGATCCATGAACAGGGTCCGCGCAACGAAAAACC
CTTCGTCCCGGTAAACTGCGGTGCCATTCCTTCAGAACTGATGGAAAGCGAATTTTTCGGTCATCGCAAAGGCAGCTTCA
GCGGCGCCCACGAAGACAAACCTGGCCTGTTTCAGGCGGCCCATAACGGTACGTTGTTTCTTGATGAGGTCGCCGACCTG
CCGTTGGCCATGCAGGTAAAGTTGCTGCGGGCGATTCAGGAAAAAGCCATCCGCAGCGTCGGCGGTCAGCAGGAGCAAGT
GGTGGATGTGCGCATCCTGTGCGCCACTCATAAAGACCTGGCTGTAGAGGTCGCCGCAGGCAGGTTTCGTCAGGATCTGT
ATTACCGATTGAATGTGATCGAGCTGCGCGTGCCCTCATTGCGCGAGCGACGTGAGGACATCGACCAGTTGGCAGCCAGT
GTTTTGCGACGACTGGCTGGCAACGGCGCTCAGCCAGTTGCGCGCCTGCACGCGCAGGCGCTGGAAACGCTGAAAAGCTA
TCGATTCCCCGGTAACGTGCGCGAACTGGAGAACATGCTGGAGCGCGCATATACCTTGTGTGAAAACGCTGAAATCCATG
CCAGCGACCTGCGTCTGGCCGAATGCGCCAGCTCCCAGGAACAAAATGGCCCGAGCCTGGCCGACATCGACAACCTTGAA
GACTACCTGGAAAGCATCGAGCGGAAACTCATTCTGCAAGCCCTGGAAGAAACCCGCTGGAACCGCACTGCAGCAGCGGA
CAGGCTAAGCCTGTCTTTCAGGTCGCTGCGTTACCGACTGAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-302)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.458	99.327	0.789
pilR	Acinetobacter baumannii strain A118	49.028	100	0.509