Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   I9H06_RS03610 Genome accession   NZ_CP066267
Coordinates   763005..764597 (-) Length   530 a.a.
NCBI ID   WP_024669785.1    Uniprot ID   A0AA40TU09
Organism   Pseudomonas tremae strain PA-1-12B     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 758005..769597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9H06_RS03595 (I9H06_03600) - 759686..760801 (-) 1116 WP_122323612.1 efflux RND transporter periplasmic adaptor subunit -
  I9H06_RS03600 (I9H06_03605) - 760883..761500 (-) 618 WP_122347870.1 TetR/AcrR family transcriptional regulator -
  I9H06_RS03605 (I9H06_03610) pilR 761662..763002 (-) 1341 WP_122347869.1 sigma-54 dependent transcriptional regulator Regulator
  I9H06_RS03610 (I9H06_03615) pilS 763005..764597 (-) 1593 WP_024669785.1 ATP-binding protein Regulator
  I9H06_RS03615 (I9H06_03620) - 764587..764826 (-) 240 WP_268949329.1 PP0621 family protein -
  I9H06_RS03620 (I9H06_03625) - 764965..765987 (-) 1023 WP_005895284.1 outer membrane protein assembly factor BamD -
  I9H06_RS03625 (I9H06_03630) rluD 766137..767099 (+) 963 WP_005895286.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I9H06_RS03630 (I9H06_03635) pgeF 767096..767824 (+) 729 WP_122323614.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58404.47 Da        Isoelectric Point: 7.1349

>NTDB_id=519022 I9H06_RS03610 WP_024669785.1 763005..764597(-) (pilS) [Pseudomonas tremae strain PA-1-12B]
MTADTPYLASPQAQRILRLYHLYRLTIGVVLVLLISTSMETELLQLANPNLFRAGCWLYLVFNILVVVLLERPTRQAQLF
SLAMTDAIMLSGLFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAISAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEGLAEQRAADVDSLEELNALILQRMRTGILVLDARRQVLLANQGALTLLGHERLVGQVID
AYSPQLVDRLRQWLINPIMVPRSISVSAIGPELQPSFAALNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSTPDRRLAQIIHDQSQRIDRVIENVLQLSRRREAKPDLLDLSVWLERFVSDLRASVPPD
QTIHVETGPGVLTTRMDAEQLTQVMTNLVQNGLRYSRQNHAYAQVWLRLHHDPKSALPVLEVLDDGPGVSEQHLSKIFEP
FFTTESKGTGLGLYLSRELCESNRAHLEYVSRQSGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=519022 I9H06_RS03610 WP_024669785.1 763005..764597(-) (pilS) [Pseudomonas tremae strain PA-1-12B]
GTGACCGCTGATACGCCTTACCTTGCCAGCCCACAGGCGCAACGGATTCTGCGGCTGTATCACCTTTATCGACTGACCAT
CGGCGTCGTCCTGGTGTTGCTCATTTCCACAAGCATGGAGACCGAGCTTCTACAGTTGGCAAACCCGAACCTGTTCCGGG
CAGGTTGCTGGCTGTATCTGGTGTTCAACATTCTGGTCGTGGTGCTACTGGAACGCCCTACGCGCCAGGCTCAGCTGTTC
AGCCTGGCCATGACCGACGCAATCATGCTCTCAGGCCTGTTCTATGCGGCGGGCGGCCCTTCCAGTGGTATCGGCAATCT
GCTGATTGCTTCGGTGGCCATCAGCAACGTGCTGTTGCGCGGTCGCATCGGTCTGCTGATCGCTGCCATATCGGCCATCG
GCATCATTTACCTGACGTTCTATATCAGCTTCGGCACACCCTCGGTTTCCAATGATTACGTGCAAGCGGGGTCCTTGGGC
GCTTTGTGCTTTGCTGCTGCGTTGCTGGTGCAGGCGCTGACGGCACGCATGCAGGTCAGCGAGGGGCTGGCCGAACAACG
GGCCGCAGATGTCGACAGCCTTGAAGAACTCAACGCGCTCATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTGGACG
CCCGCCGCCAGGTGCTGCTGGCCAATCAGGGCGCGCTGACCCTGCTGGGCCACGAGCGGCTGGTCGGTCAGGTCATCGAC
GCTTATTCGCCGCAGCTGGTGGATCGCCTTCGGCAGTGGCTGATCAATCCGATCATGGTGCCACGCAGTATCAGCGTCTC
GGCGATCGGCCCGGAGCTGCAGCCGAGTTTTGCCGCACTCAATCGTGGCGATCAGCGCCAGACGCTGATCTTTCTCGAAG
ACCTGTCGCAGATTGCTCACCAGGCACAGCAGCTAAAACTGGCAGCGCTGGGCCGTCTGACTGCCGGGATTGCCCATGAA
ATCCGCAACCCCTTGGGGGCTGTCAGCCATGCGGCGCAGTTACTCAACGAATCGGAAGAGCTCAGCACGCCGGATCGCCG
CCTGGCGCAGATCATTCACGACCAGTCGCAGCGCATTGACCGGGTGATTGAAAACGTACTGCAACTGTCCCGACGACGCG
AGGCGAAACCGGACCTGCTGGACCTCAGCGTCTGGCTTGAAAGATTTGTCAGCGACCTTCGCGCCTCTGTCCCGCCCGAT
CAGACTATCCACGTGGAAACAGGTCCCGGCGTGCTGACCACCCGCATGGACGCGGAGCAATTGACTCAGGTCATGACTAA
CCTGGTGCAGAACGGCCTACGCTACAGCCGCCAAAATCATGCGTACGCGCAGGTCTGGCTGAGGCTGCACCATGATCCGA
AAAGCGCCCTGCCCGTTCTGGAAGTGCTGGATGATGGTCCGGGCGTCAGTGAGCAGCACCTGAGCAAGATTTTCGAACCG
TTTTTCACGACTGAAAGCAAAGGCACCGGCCTGGGTCTATACCTTTCCCGAGAGTTATGCGAAAGCAATCGGGCGCATTT
GGAATACGTCTCCCGACAAAGCGGTGGCAGTTGTTTGCGCATCACCTTCGCCCACCCGTTCAAAACGAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.959

100

0.621