Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   I9H07_RS15960 Genome accession   NZ_CP066265
Coordinates   3600362..3602578 (-) Length   738 a.a.
NCBI ID   WP_058824728.1    Uniprot ID   -
Organism   Pseudomonas syringae strain PA-2-9E     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3595362..3607578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9H07_RS15930 (I9H07_15820) murB 3596162..3597181 (-) 1020 WP_236424723.1 UDP-N-acetylmuramate dehydrogenase -
  I9H07_RS15935 (I9H07_15825) kdsB 3597216..3597980 (-) 765 WP_024674363.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  I9H07_RS15940 (I9H07_15830) - 3597977..3598162 (-) 186 WP_007253405.1 Trm112 family protein -
  I9H07_RS15945 (I9H07_15835) lpxK 3598180..3599175 (-) 996 WP_058824727.1 tetraacyldisaccharide 4'-kinase -
  I9H07_RS15950 (I9H07_15840) - 3599175..3599606 (-) 432 WP_007253407.1 biopolymer transporter ExbD -
  I9H07_RS15955 (I9H07_15845) exbB 3599603..3600319 (-) 717 WP_063885127.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  I9H07_RS15960 (I9H07_15850) comA 3600362..3602578 (-) 2217 WP_058824728.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  I9H07_RS15965 (I9H07_15855) - 3602715..3603503 (-) 789 WP_058824729.1 ABC transporter permease -
  I9H07_RS15970 (I9H07_15860) - 3603500..3604432 (-) 933 WP_024671866.1 ABC transporter ATP-binding protein -
  I9H07_RS15975 (I9H07_15865) - 3604619..3605242 (-) 624 WP_058824730.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80292.42 Da        Isoelectric Point: 10.3484

>NTDB_id=519001 I9H07_RS15960 WP_058824728.1 3600362..3602578(-) (comA) [Pseudomonas syringae strain PA-2-9E]
MRTGMIALALGLVALRFLPVLPPTWLLLLMPVVALMLLPFRTYPLALFLLGFTWACMSAQWALHDRLPQRLDGRTLWVQG
NVVGLPSVAEGVVRFELEDASSRRSKLPARIRLAWYGGPEVRSGERWRLAVKLKRPGGLVNPDAFDYQAWLLAQRIGATG
TVADGQRLAPARGAWRDGVRQRLLAVDAQGREGGLAALVLGDGSGLSRTDWQVLQDTGTVHLLVISGQHIGLLAGVVYAL
VAGLARWGLWPRAVPWLPAACVLAFGAALGYGLLAGFDVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNTVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWSGWQSWSRAQWLIAVGLLPILLALNLPISLSGPFANLIAVPWVSVIVLPPAL
IGTLLLPIPVLGEGLLWLAGGALEWLFVFLALVAAALPAWLPSAVPVWAWVLSLFGALLLLLPKGVPMRPLGWPLLLLCV
FPPLESVPTGQVDVLQLDVGQGLAILLRTRHHTLLYDAGPRFGEFDIGERVVVPAIRKTGVRHLDLMLISHADADHAGGA
QAVHQAFPVTRVLGGELARLAPQLDAGLCESGERWEWDGVVFTTWRWEQAPDGNAASCILSVDAGGERLLLTGDIDVHAE
RAAIDSGFDLRAHWLQAPHHGSRSSSSKPFLQAVAPVGVLISRGRNNAFGHPHPRVMARYRWLGIPGYDSAELGAIRLQL
GAFGSPRAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=519001 I9H07_RS15960 WP_058824728.1 3600362..3602578(-) (comA) [Pseudomonas syringae strain PA-2-9E]
ATGCGCACAGGGATGATCGCGCTCGCACTGGGGCTTGTTGCCCTGCGTTTTCTGCCGGTATTGCCGCCGACCTGGCTGTT
GCTGCTGATGCCGGTCGTGGCATTGATGCTGCTGCCGTTTCGCACTTATCCATTGGCGTTGTTTCTGCTCGGTTTCACCT
GGGCGTGCATGTCCGCGCAGTGGGCGCTGCATGACCGTCTGCCGCAGCGGCTGGACGGGCGGACGTTGTGGGTACAGGGC
AACGTAGTCGGATTGCCGAGTGTTGCCGAGGGCGTGGTGCGTTTCGAGCTGGAGGACGCCAGCTCACGACGGTCGAAACT
GCCTGCGCGCATTCGCCTGGCCTGGTACGGCGGCCCTGAGGTCCGTAGCGGCGAGCGCTGGCGTCTGGCGGTCAAACTCA
AGCGTCCGGGCGGGCTGGTCAATCCGGATGCCTTCGATTATCAGGCCTGGCTGCTGGCGCAGCGCATCGGCGCTACCGGG
ACGGTGGCAGACGGTCAGCGGCTGGCCCCGGCACGTGGGGCCTGGCGCGATGGCGTTCGTCAGCGGTTGTTGGCCGTCGA
TGCGCAGGGCAGGGAAGGTGGTCTGGCTGCCTTGGTGCTGGGCGATGGCTCTGGATTGTCGCGCACCGACTGGCAGGTGC
TGCAAGACACCGGCACGGTGCATCTGCTGGTGATTTCCGGTCAGCACATCGGCCTGCTGGCCGGGGTGGTGTACGCGCTG
GTGGCAGGGCTGGCACGTTGGGGGCTGTGGCCGCGCGCCGTGCCGTGGCTTCCCGCCGCTTGCGTGCTGGCGTTTGGCGC
AGCCTTGGGTTACGGGCTGCTGGCTGGTTTCGACGTGCCGGTACGGCGCGCCTGTGTGATGGTCGCCATGGTGCTGCTCT
GGCGTTTACGCTTTCGGCATCTGGGCGTGGTCTGGCCGTTATTGCTGTCATTCAACACGGTGCTGATCTTTGAACCCTTG
GTGACGTTACAACCGGGGTTCTGGTTGTCCTTTGCGGCGGTCGGCATTCTGATTCTGATTTTCAGTGGCCGACTGGGTGC
CTGGAGCGGGTGGCAGAGCTGGAGCCGTGCGCAGTGGTTGATCGCCGTAGGCCTGCTGCCGATTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGTGGTCCGTTTGCCAATCTTATTGCTGTTCCGTGGGTCAGCGTGATCGTTCTGCCGCCTGCACTG
ATCGGTACCTTGCTGCTGCCCATTCCGGTGTTGGGTGAAGGTCTATTGTGGCTCGCCGGAGGCGCGCTGGAATGGCTGTT
CGTGTTCCTCGCCCTGGTCGCAGCAGCGCTGCCCGCCTGGTTACCCAGCGCGGTGCCAGTCTGGGCCTGGGTCTTGAGTC
TTTTTGGGGCCTTGCTGTTGTTGCTGCCCAAGGGCGTGCCGATGCGTCCGTTGGGCTGGCCTTTGCTGTTGCTGTGTGTG
TTTCCGCCGCTCGAATCGGTGCCGACGGGGCAGGTCGACGTACTGCAACTGGATGTGGGCCAAGGGCTGGCGATTCTCCT
GCGTACCCGTCATCACACGCTGTTGTATGACGCCGGGCCGCGTTTCGGTGAGTTCGATATCGGCGAGCGGGTGGTCGTGC
CCGCGATTCGCAAGACCGGTGTTCGTCATCTGGATCTGATGCTGATCAGCCACGCCGACGCGGATCATGCCGGTGGTGCG
CAGGCGGTTCATCAGGCGTTCCCGGTGACTCGGGTGCTGGGCGGTGAACTGGCCAGGCTCGCCCCGCAGCTCGATGCCGG
GCTGTGCGAAAGTGGTGAGCGCTGGGAGTGGGATGGTGTGGTATTCACCACGTGGCGCTGGGAGCAGGCTCCCGATGGGA
ATGCGGCTTCCTGCATCCTCAGCGTCGATGCCGGTGGCGAGCGTCTGCTGCTGACAGGCGATATCGATGTTCATGCCGAG
CGTGCAGCCATCGACAGCGGTTTCGACCTGCGCGCCCACTGGTTGCAGGCGCCCCATCACGGCAGCCGGTCCTCGTCTTC
GAAGCCCTTTCTTCAGGCTGTCGCGCCCGTTGGCGTATTGATCTCCCGAGGGCGCAACAATGCCTTCGGGCATCCGCACC
CGCGGGTCATGGCGCGTTATCGATGGTTGGGCATCCCGGGTTATGACAGCGCCGAACTGGGCGCCATCCGTCTGCAACTG
GGTGCATTCGGCTCGCCCCGGGCAGAACGTGCGCAGCGGCGGTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.547

97.019

0.617
  comA Ralstonia pseudosolanacearum GMI1000

33.808

100

0.386