Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   I9H07_RS15955 Genome accession   NZ_CP066265
Coordinates   3599603..3600319 (-) Length   238 a.a.
NCBI ID   WP_063885127.1    Uniprot ID   -
Organism   Pseudomonas syringae strain PA-2-9E     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3594603..3605319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9H07_RS15930 (I9H07_15820) murB 3596162..3597181 (-) 1020 WP_236424723.1 UDP-N-acetylmuramate dehydrogenase -
  I9H07_RS15935 (I9H07_15825) kdsB 3597216..3597980 (-) 765 WP_024674363.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  I9H07_RS15940 (I9H07_15830) - 3597977..3598162 (-) 186 WP_007253405.1 Trm112 family protein -
  I9H07_RS15945 (I9H07_15835) lpxK 3598180..3599175 (-) 996 WP_058824727.1 tetraacyldisaccharide 4'-kinase -
  I9H07_RS15950 (I9H07_15840) - 3599175..3599606 (-) 432 WP_007253407.1 biopolymer transporter ExbD -
  I9H07_RS15955 (I9H07_15845) exbB 3599603..3600319 (-) 717 WP_063885127.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  I9H07_RS15960 (I9H07_15850) comA 3600362..3602578 (-) 2217 WP_058824728.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  I9H07_RS15965 (I9H07_15855) - 3602715..3603503 (-) 789 WP_058824729.1 ABC transporter permease -
  I9H07_RS15970 (I9H07_15860) - 3603500..3604432 (-) 933 WP_024671866.1 ABC transporter ATP-binding protein -
  I9H07_RS15975 (I9H07_15865) - 3604619..3605242 (-) 624 WP_058824730.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25792.30 Da        Isoelectric Point: 7.9112

>NTDB_id=519000 I9H07_RS15955 WP_063885127.1 3599603..3600319(-) (exbB) [Pseudomonas syringae strain PA-2-9E]
MVEWRQFFDGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDSEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSTGATANAGV
LASGISKALICTASGLIVAIPAIFFHRFLQGRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKVDLKSLARAGGSKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=519000 I9H07_RS15955 WP_063885127.1 3599603..3600319(-) (exbB) [Pseudomonas syringae strain PA-2-9E]
ATGGTAGAGTGGCGCCAATTTTTCGATGGAGTGATCACTGTGTGGGAACTGGTCAAGTCTGGCGGCTGGATGATGCTGCC
GATCATTTTGAGTTCCATCGCCGCTGCCGGCATTATCATCGAGCGTCTGTGGACGCTGCGTGCCAGCCGTATCGCGCCGC
CGCATCTATTGGGACAGGCCTGGCAGTGGATTCAGGAAAAGAAGCTCGATAGCGAAAAACTCAAGCAACTGCGCGCCGAC
TCGCCGCTGGGTGAAATCCTCGCGGCAGGTCTGGCCAACTCCAGACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGA
AGCCGCCGCGCGGGTCATTCATGATCTGGAACGCTACCTGAGCGCGCTGGGCTCGATTGCGGCAATGGCACCACTGCTTG
GCCTGCTCGGGACAGTATTGGGCATGATCGAGATCTTCGGCTCGTTCAACAGTACTGGCGCGACAGCCAATGCCGGCGTG
CTGGCAAGCGGTATTTCCAAGGCGCTCATCTGTACGGCATCGGGCCTGATTGTCGCGATCCCGGCGATCTTCTTTCATCG
CTTTCTGCAGGGCCGTGTCGATGAGCTGGTGGTCGGCATGGAGCAGCAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGTGATGTCGATCTGATCGACGCCAAGGTTGATCTCAAGTCGCTGGCCAGGGCGGGCGGGAGCAAGAAAAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

77.619

88.235

0.685