Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   JCR18_RS16080 Genome accession   NZ_CP066232
Coordinates   3343858..3344241 (-) Length   127 a.a.
NCBI ID   WP_033915473.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain G20AB010     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3338858..3349241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCR18_RS16065 (JCR18_16065) - 3340750..3342828 (-) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -
  JCR18_RS16070 (JCR18_16070) - 3342875..3343411 (-) 537 WP_000729757.1 chemotaxis protein CheW -
  JCR18_RS16075 (JCR18_16075) - 3343472..3343834 (-) 363 WP_000101096.1 PleD family two-component system response regulator -
  JCR18_RS16080 (JCR18_16080) pilG 3343858..3344241 (-) 384 WP_033915473.1 twitching motility response regulator PilG Regulator
  JCR18_RS16085 (JCR18_16085) - 3344524..3345162 (+) 639 WP_001989943.1 hypothetical protein -
  JCR18_RS16090 (JCR18_16090) - 3345222..3346340 (+) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14234.25 Da        Isoelectric Point: 4.5762

>NTDB_id=518695 JCR18_RS16080 WP_033915473.1 3343858..3344241(-) (pilG) [Acinetobacter baumannii strain G20AB010]
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGFFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSS

Nucleotide


Download         Length: 384 bp        

>NTDB_id=518695 JCR18_RS16080 WP_033915473.1 3343858..3344241(-) (pilG) [Acinetobacter baumannii strain G20AB010]
ATGGAAGATGCATTCCAAAATCTGAAAGTAATGGTTATTGATGACTCAAAAACTATTCGCCGTACCGCAGAAACTCTATT
GCAACGCGAAGGTTGCGAAGTGATTACTGCTGTCGATGGATTTGAAGCTTTATCTAAAATTGCTGAAGCGAATCCGGATA
TTGTTTTTGTAGATATCATGATGCCTCGTTTAGACGGTTATCAAACTTGTGCTCTGATTAAGAACTCTCAAAATTATCAG
AACATTCCCGTTATCATGCTCTCTAGTAAAGATGGTTTTTTTGATCAGGCAAAAGGGCGTGTGGTAGGTTCAGATGAATA
CTTGACGAAACCTTTTAGCAAAGATGAATTGCTAAATGCGATTCGTAATCATGTAAGTTCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

99.213

100

0.992
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37