Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JD965_RS15435 Genome accession   NZ_CP066219
Coordinates   3024628..3025272 (-) Length   214 a.a.
NCBI ID   WP_047476983.1    Uniprot ID   -
Organism   Bacillus siamensis strain B28     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3019628..3030272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS15400 (JD965_15400) - 3020813..3021244 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  JD965_RS15405 (JD965_15405) - 3021244..3021585 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  JD965_RS15410 (JD965_15410) - 3021578..3023059 (+) 1482 WP_198698073.1 Na+/H+ antiporter subunit D -
  JD965_RS15415 (JD965_15415) - 3023065..3023541 (+) 477 WP_016938121.1 Na+/H+ antiporter subunit E -
  JD965_RS15420 (JD965_15420) - 3023541..3023825 (+) 285 WP_016938120.1 Na(+)/H(+) antiporter subunit F1 -
  JD965_RS15425 (JD965_15425) mnhG 3023809..3024183 (+) 375 WP_049627262.1 monovalent cation/H(+) antiporter subunit G -
  JD965_RS15430 (JD965_15430) - 3024223..3024606 (-) 384 WP_016938118.1 hotdog fold thioesterase -
  JD965_RS15435 (JD965_15435) comA 3024628..3025272 (-) 645 WP_047476983.1 response regulator transcription factor Regulator
  JD965_RS15440 (JD965_15440) comP 3025353..3027644 (-) 2292 WP_016938116.1 histidine kinase Regulator
  JD965_RS15445 (JD965_15445) comX 3027656..3027820 (-) 165 WP_007613432.1 competence pheromone ComX -
  JD965_RS15450 (JD965_15450) - 3027820..3028731 (-) 912 WP_029575319.1 polyprenyl synthetase family protein -
  JD965_RS15455 (JD965_15455) degQ 3028883..3029023 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  JD965_RS15460 (JD965_15460) - 3029489..3029830 (+) 342 WP_049627267.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24257.66 Da        Isoelectric Point: 4.9897

>NTDB_id=518528 JD965_RS15435 WP_047476983.1 3024628..3025272(-) (comA) [Bacillus siamensis strain B28]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDLSGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSDQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=518528 JD965_RS15435 WP_047476983.1 3024628..3025272(-) (comA) [Bacillus siamensis strain B28]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCCGATGCCAGTGAACAGTTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACCTCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAAGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACTCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGATCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCCGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTACTGATCGCCAAGTCAGATAATGTAC
TATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86