Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SCIM_RS01855 Genome accession   NC_018073
Coordinates   373134..375092 (+) Length   652 a.a.
NCBI ID   WP_003078276.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 368134..380092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS01835 (SCIM_0318) rsmH 368208..369158 (+) 951 WP_003078305.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  SCIM_RS01840 (SCIM_0319) ftsL 369167..369484 (+) 318 WP_003070323.1 cell division protein FtsL -
  SCIM_RS01845 (SCIM_0320) pbp2X 369488..371746 (+) 2259 WP_003078331.1 penicillin-binding protein PBP2X -
  SCIM_RS01850 (SCIM_0321) mraY 371748..372731 (+) 984 WP_003078417.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  SCIM_RS01855 (SCIM_0322) amiA 373134..375092 (+) 1959 WP_003078276.1 peptide ABC transporter substrate-binding protein Regulator
  SCIM_RS01865 (SCIM_0323) - 375352..375918 (+) 567 Protein_349 glutamine amidotransferase-related protein -
  SCIM_RS01870 (SCIM_0324) - 375969..376379 (+) 411 WP_003073787.1 GyrI-like domain-containing protein -
  SCIM_RS01880 (SCIM_0325) - 376792..377673 (+) 882 WP_003073785.1 class II fructose-bisphosphate aldolase -
  SCIM_RS01890 (SCIM_0326) - 378111..378557 (+) 447 WP_003073783.1 LytTR family DNA-binding domain-containing protein -
  SCIM_RS01895 (SCIM_0327) - 378563..379225 (+) 663 WP_003073781.1 LiaF transmembrane domain-containing protein -
  SCIM_RS01900 (SCIM_0328) rpmB 379360..379548 (+) 189 WP_003025909.1 50S ribosomal protein L28 -
  SCIM_RS01905 (SCIM_0329) - 379723..380088 (+) 366 WP_003025907.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72602.13 Da        Isoelectric Point: 9.1535

>NTDB_id=51852 SCIM_RS01855 WP_003078276.1 373134..375092(+) (amiA) [Streptococcus intermedius JTH08]
MKSSKWIIATGIVLSAGILLAGCGKSSSSTSTYSYVYTQDPDTLNYLMANRATTSDVVTNLVDGLLENDRYGNLVPALAK
SWTVSKDGLTYTYKLRKDAKWYTSEGEEYAGVKAQDFVTGLKYAADNKSEALYLVQDSVKGLDAYIKGETKDFSKVGVKA
IDDYTVQYTLSRAETYWNSKTTNNILFPVNAAFLKSQGKNFGSVKPSSILYNGPYLLKSLTAKSSMEFAKNPHYYDKKNV
HLDNIKLTYYDGSDQEALIRNFTEGAYSAARLYPNSSSFASVKKQYNNNIIYSLQDATSYYYNFNLNRQSYHHTSKKTDA
QKTATQEAVLNKAFRQAINFAYNRTSYGAQSNGKDGATKVLRNTLVPPTFVSIGDKTFGDLVSSKLVKYGSEWSDMNLAD
AQDAYYNPAKAKVKFAQAKAELQAKGVQFPIHLDVPADQTSKIGVQWESSMKQSVESVLGKDNVVIDIQQMSSDELNNIG
YFANTAAQKDYDLYNGGWSGDYQDPSTYLDTLNTKNGGSLKNFGLEPGQENDKIKTVGLDTYTTMLEEANAETNEMKRYE
KYAEAQAWLIDSGLTMPNLSLGGTPSVTKTVPFSRSYSLVGIKGGSSNYFKYVKLQDKIVTTKEYESAKKKWLKEKEASN
KRAQDNYENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=51852 SCIM_RS01855 WP_003078276.1 373134..375092(+) (amiA) [Streptococcus intermedius JTH08]
ATGAAATCATCAAAATGGATTATTGCAACGGGAATTGTACTAAGTGCTGGAATTTTATTGGCTGGTTGTGGCAAGTCAAG
CTCTAGCACATCGACATATTCATATGTGTATACACAAGATCCAGATACGCTGAATTATTTGATGGCGAATCGAGCAACAA
CATCAGATGTTGTTACCAATTTAGTTGATGGATTATTAGAAAATGACCGATACGGGAACTTAGTTCCAGCACTTGCTAAG
TCATGGACAGTCTCCAAAGATGGTTTGACGTATACGTATAAATTACGTAAAGACGCGAAATGGTACACATCAGAAGGCGA
AGAGTACGCAGGTGTAAAAGCACAAGACTTTGTAACTGGTTTGAAATATGCTGCAGATAACAAATCCGAAGCTCTTTACC
TTGTACAAGACTCTGTCAAAGGATTAGATGCGTATATCAAAGGGGAGACAAAAGATTTTTCAAAGGTAGGTGTAAAAGCT
ATTGATGATTATACAGTACAGTATACTCTGAGTCGTGCAGAAACTTATTGGAATTCAAAAACAACCAATAACATCCTCTT
CCCAGTCAATGCAGCCTTCTTAAAATCCCAAGGAAAGAATTTTGGTTCTGTAAAACCGAGTAGCATTCTTTACAACGGTC
CATATCTGCTGAAGTCTTTGACGGCTAAATCCTCTATGGAATTTGCAAAAAATCCTCATTATTATGACAAAAAGAATGTT
CATTTAGACAATATAAAGTTGACATATTATGATGGATCGGACCAAGAAGCGCTTATTCGAAACTTTACTGAGGGTGCTTA
TAGTGCAGCCCGTCTTTATCCAAATAGTTCTAGTTTTGCTTCTGTTAAGAAACAGTATAATAACAATATCATCTATAGTT
TACAAGATGCGACCAGTTATTATTATAACTTTAACTTAAATCGTCAGTCCTATCACCATACATCTAAGAAAACAGATGCA
CAAAAAACTGCAACACAGGAGGCAGTACTCAATAAAGCATTTCGTCAAGCAATCAATTTCGCCTACAATCGAACGTCTTA
TGGTGCGCAAAGCAATGGGAAAGATGGAGCGACAAAAGTATTGCGGAATACACTTGTTCCACCAACGTTTGTTTCAATTG
GTGATAAAACATTTGGGGATCTCGTATCTTCCAAATTGGTGAAGTACGGTTCAGAATGGTCTGATATGAATTTGGCTGAT
GCACAGGATGCTTACTACAATCCAGCAAAAGCAAAAGTAAAATTTGCACAAGCAAAAGCAGAGTTGCAAGCTAAAGGAGT
TCAGTTCCCAATTCATTTGGATGTACCGGCTGATCAGACAAGTAAAATTGGTGTTCAATGGGAAAGTTCTATGAAACAAT
CTGTTGAGTCTGTTTTAGGAAAAGATAATGTTGTCATTGATATTCAACAAATGAGTTCAGATGAATTGAATAACATTGGC
TACTTTGCTAATACTGCTGCTCAAAAAGATTATGATTTATACAATGGTGGATGGTCAGGGGATTATCAAGATCCGTCAAC
TTATCTAGATACCTTGAATACAAAAAATGGTGGTAGTTTGAAGAACTTTGGCTTGGAACCTGGTCAAGAGAACGATAAGA
TAAAAACTGTTGGTTTGGATACCTATACTACAATGCTTGAGGAAGCAAATGCTGAAACCAATGAGATGAAGCGTTATGAG
AAATATGCTGAAGCGCAGGCGTGGTTAATTGATAGTGGGTTGACAATGCCAAATCTTTCTCTTGGAGGAACACCATCTGT
GACAAAGACAGTTCCGTTTAGCCGTTCATATTCTTTAGTAGGAATTAAGGGTGGCTCAAGCAACTACTTTAAATATGTTA
AGTTGCAAGATAAAATTGTGACGACCAAAGAATACGAAAGTGCTAAAAAGAAATGGCTGAAAGAAAAAGAAGCTTCTAAT
AAAAGAGCACAAGATAACTATGAAAATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.534

100

0.58
  amiA3 Streptococcus thermophilus LMD-9

56.925

100

0.574
  amiA3 Streptococcus thermophilus LMG 18311

56.773

100

0.572

Multiple sequence alignment