Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   JD965_RS01945 Genome accession   NZ_CP066219
Coordinates   384834..385787 (+) Length   317 a.a.
NCBI ID   WP_045926248.1    Uniprot ID   A0AAE2NZX8
Organism   Bacillus siamensis strain B28     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 379834..390787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS01920 (JD965_01920) - 379880..381313 (+) 1434 WP_198698363.1 sensor histidine kinase -
  JD965_RS01925 (JD965_01925) rapC 381467..382615 (+) 1149 WP_045926250.1 tetratricopeptide repeat protein Regulator
  JD965_RS01930 (JD965_01930) phrC 382599..382718 (+) 120 WP_016937261.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  JD965_RS01935 (JD965_01935) - 382860..382958 (-) 99 WP_016937260.1 YjcZ family sporulation protein -
  JD965_RS01940 (JD965_01940) - 383055..384419 (-) 1365 WP_198698364.1 aspartate kinase -
  JD965_RS01945 (JD965_01945) ceuB 384834..385787 (+) 954 WP_045926248.1 ABC transporter permease Machinery gene
  JD965_RS01950 (JD965_01950) - 385777..386724 (+) 948 WP_198698365.1 iron chelate uptake ABC transporter family permease subunit -
  JD965_RS01955 (JD965_01955) - 386718..387476 (+) 759 WP_198698366.1 ABC transporter ATP-binding protein -
  JD965_RS01960 (JD965_01960) - 387498..388442 (+) 945 WP_016937255.1 siderophore ABC transporter substrate-binding protein -
  JD965_RS01965 (JD965_01965) - 388484..389908 (-) 1425 WP_198698367.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34975.26 Da        Isoelectric Point: 9.6741

>NTDB_id=518479 JD965_RS01945 WP_045926248.1 384834..385787(+) (ceuB) [Bacillus siamensis strain B28]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQASTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSVATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGMKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNIVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=518479 JD965_RS01945 WP_045926248.1 384834..385787(+) (ceuB) [Bacillus siamensis strain B28]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTATTGGCGTGTACTTCTATTTTTATCGGTGTAGAAGACTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAAGTACATTATTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TTGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGGATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCATTGGCGGGAAATTTCCTGTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTTGTCGGTTTAATGCTTGGGAATATCGTCAGTTCAGTCGCCACGTTTATCGCGTATAAATACGATCTGATC
CAAAACCTGTCGTCCTGGCTGCAGGGGGATTTCTCATTGGTCGTCAAAGGCCGGTACGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTCTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCA
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCGTCACTTGTGATTCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATCGTGTCGATCTACAAAGGGGACAACCTGAGGAGCAGCCTGCCCCACAC
AGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATTATCTTCCCTTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGCTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.165

99.685

0.53