Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KZW90_RS18650 Genome accession   NZ_CP080233
Coordinates   3813829..3814566 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O139:H1 strain P15-25     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3808829..3819566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZW90_RS18635 (KZW90_18635) clpC 3809283..3811856 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  KZW90_RS18640 (KZW90_18640) yfiH 3811986..3812717 (-) 732 WP_001520329.1 purine nucleoside phosphorylase YfiH -
  KZW90_RS18645 (KZW90_18645) rluD 3812714..3813694 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KZW90_RS18650 (KZW90_18650) comL 3813829..3814566 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KZW90_RS18655 (KZW90_18655) raiA 3814837..3815178 (+) 342 WP_063085007.1 ribosome-associated translation inhibitor RaiA -
  KZW90_RS18660 (KZW90_18660) pheL 3815282..3815329 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KZW90_RS18665 (KZW90_18665) pheA 3815428..3816588 (+) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  KZW90_RS18670 (KZW90_18670) tyrA 3816631..3817752 (-) 1122 WP_000225220.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KZW90_RS18675 (KZW90_18675) aroF 3817763..3818833 (-) 1071 WP_063085133.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KZW90_RS18680 (KZW90_18680) yfiL 3819043..3819408 (+) 366 WP_001353010.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=518293 KZW90_RS18650 WP_000197686.1 3813829..3814566(+) (comL) [Escherichia coli O139:H1 strain P15-25]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=518293 KZW90_RS18650 WP_000197686.1 3813829..3814566(+) (comL) [Escherichia coli O139:H1 strain P15-25]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376