Detailed information NTG0518264

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: JC773_RS15830
• Genome accession: NZ_CP066185
• Coordinates: 3123347..3124060 (+)
• Length: 237 a.a.
• NCBI ID: WP_048722965.1
• Uniprot ID: A0AAX2CGP3
• Organism: Bacillus cytotoxicus strain PDT2.12
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 3118347..3129060

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JC773_RS22250	-	3118443..3118577 (+)	135	WP_235436365.1	NmrA family NAD(P)-binding protein	-
JC773_RS22255	-	3118565..3118948 (+)	384	WP_235436366.1	NAD(P)H-binding protein	-
JC773_RS15805 (JC773_15805)	-	3119347..3120159 (+)	813	WP_012094306.1	MerR family transcriptional regulator	-
JC773_RS15810 (JC773_15810)	-	3120504..3121421 (+)	918	WP_048723104.1	ABC transporter ATP-binding protein	-
JC773_RS15815 (JC773_15815)	-	3121418..3122170 (+)	753	WP_048722961.1	ABC transporter permease	-
JC773_RS15820 (JC773_15820)	-	3122183..3122914 (+)	732	WP_048722963.1	ABC transporter permease	-
JC773_RS22260	-	3123043..3123246 (+)	204	WP_235436391.1	DUF1093 domain-containing protein	-
JC773_RS15830 (JC773_15830)	scnR	3123347..3124060 (+)	714	WP_048722965.1	response regulator transcription factor	Regulator
JC773_RS15835 (JC773_15835)	-	3124061..3125467 (+)	1407	WP_048722967.1	HAMP domain-containing sensor histidine kinase	-
JC773_RS15840 (JC773_15840)	-	3125824..3126162 (-)	339	WP_087098723.1	DUF4064 domain-containing protein	-
JC773_RS15845 (JC773_15845)	-	3126179..3126682 (-)	504	WP_048722972.1	DUF4352 domain-containing protein	-
JC773_RS15850 (JC773_15850)	-	3126612..3126920 (+)	309	WP_140388422.1	hypothetical protein	-
JC773_RS15855 (JC773_15855)	abrB	3127345..3127623 (+)	279	WP_012094321.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	Regulator
JC773_RS15860 (JC773_15860)	-	3127842..3128636 (+)	795	WP_048722974.1	LysM peptidoglycan-binding domain-containing protein	-
JC773_RS15865 (JC773_15865)	-	3128844..3129041 (+)	198	WP_048722977.1	hypothetical protein	-

Sequence

Protein

• Length: 237 a.a.
• Molecular weight: 26942.45 Da
• Isoelectric Point: 6.2727

>NTDB_id=518264 JC773_RS15830 WP_048722965.1 3123347..3124060(+) (scnR) [Bacillus cytotoxicus strain PDT2.12]
MGNLKDKKILIVDDEPEIRIMIERFLRKEGFFRIFSAADCTSALSLCRVDRPDIVILDVMLPDGDGFSLLSSIRQFSNMP
VLFLSARGEDEDRLLGLGLGADDYIVKPFLPRELVLRLIAVLKRVYSSPVVERLSIFQLGKQTVDLESAVVYRGETEMPL
TAKEHAILVKLYENRGRIVTSDAICQAVWGDDSYGYENTLMVHIRRVREKIEPDPSKPIYLLTVRGLGYKLLLKETH

Nucleotide

• Length: 714 bp

>NTDB_id=518264 JC773_RS15830 WP_048722965.1 3123347..3124060(+) (scnR) [Bacillus cytotoxicus strain PDT2.12]
ATGGGAAATTTAAAAGATAAAAAAATCTTAATTGTCGATGATGAACCAGAAATAAGAATCATGATTGAAAGGTTCTTAAG
AAAAGAGGGATTTTTCCGGATTTTTAGTGCTGCTGATTGTACGTCAGCTCTATCGCTTTGTCGTGTAGATCGGCCAGATA
TCGTTATTCTTGATGTTATGCTACCTGATGGTGACGGCTTTTCACTTTTATCTTCGATTAGGCAGTTCTCAAATATGCCG
GTTCTGTTTCTATCTGCACGAGGAGAAGATGAGGACCGGTTACTTGGATTAGGTTTAGGGGCAGATGATTATATTGTAAA
GCCGTTCTTACCACGTGAACTCGTATTACGTCTTATCGCTGTTTTAAAACGAGTCTATTCTTCTCCTGTTGTAGAGCGTC
TATCAATCTTTCAATTAGGGAAACAAACTGTGGACTTAGAAAGCGCTGTTGTGTATAGGGGTGAAACAGAAATGCCCTTA
ACAGCAAAAGAACATGCTATTCTTGTAAAGCTATATGAGAATCGAGGTCGAATTGTGACAAGCGACGCTATATGTCAAGC
AGTTTGGGGAGATGATAGCTACGGTTACGAAAATACATTAATGGTCCATATTAGGCGAGTACGTGAAAAAATTGAACCAG
ATCCCTCCAAACCGATTTATCTTCTTACTGTGAGGGGACTAGGGTATAAATTGCTTTTGAAGGAGACGCATTAA

Domains

Predicted by InterproScan.

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (156-231)

• Response regulator receiver domain (Response_reg) (9-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	49.782	96.624	0.481
vicR	Streptococcus mutans UA159	40.611	96.624	0.392
micA	Streptococcus pneumoniae Cp1015	40.351	96.203	0.388