Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   JDY60_RS06610 Genome accession   NZ_CP066172
Coordinates   1397479..1399461 (-) Length   660 a.a.
NCBI ID   WP_200370434.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1392479..1404461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS06610 (JDY60_06610) amiA3 1397479..1399461 (-) 1983 WP_200370434.1 peptide ABC transporter substrate-binding protein Regulator
  JDY60_RS06615 (JDY60_06615) rfbD 1399699..1400553 (+) 855 WP_200370436.1 dTDP-4-dehydrorhamnose reductase -
  JDY60_RS06620 (JDY60_06620) rfbB 1400614..1401660 (-) 1047 WP_200370438.1 dTDP-glucose 4,6-dehydratase -
  JDY60_RS06625 (JDY60_06625) - 1401679..1402272 (-) 594 WP_200370441.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  JDY60_RS06630 (JDY60_06630) rfbA 1402273..1403142 (-) 870 WP_049519434.1 glucose-1-phosphate thymidylyltransferase RfbA -
  JDY60_RS06635 (JDY60_06635) - 1403214..1404266 (-) 1053 WP_200370443.1 sugar transferase -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73349.63 Da        Isoelectric Point: 4.5663

>NTDB_id=518059 JDY60_RS06610 WP_200370434.1 1397479..1399461(-) (amiA3) [Streptococcus oralis strain SF100]
MKSSKLLALAGVTLLAAATLAACSGSSSNAKGEKTFSYIYETDPDNLNYLTTGKAATANITSNVIDGLLENDRYGNFVPS
MAEDWSVSKDGLTYTYTLRKDAKWYTSEGEEYAEVKAQDFVTGLKYAADKKSDGLYLVQESIKGLDAYVKGEITDFSQVG
IKALDDYTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKGTDPSSILYNGPFLLKSIVAKSSVEFEKNPNYWD
KDNVHLDKVKLSFWDGQDTNKPTEAFKDGSFTMARLFPTSASYSETEKAFKDNIVYTQQDSTTYLVGTNIDRQSYKYTSK
TTDEEKTSTKKALLNKDFRQAIAFGFDRTAYASQVNGASGATKLLRNLFVPPTFVQADGKNFGELVKEKLVTYGDEWSNV
NLDDAQDGLYNPDKAKAEFAKAKAALQAEGVKFPIHLDMPVDQTNTTKVQRVQSFKQSVEENLGSDNVVIDIQQLQKDDV
QNITYFAETAAGEDWDISDNVGWSPDYIDPSTYLDIIKPSVGENTKTYLGFDSGTNNAAAKQVGLEDYEKMVVEAGEETT
DVSKRYEKYAAAQAWLTDSALLIPTTSQTGRPMLSKMVPFTLPFAYSGNKGMSEALLYKYLEVQDKAVTTEEYQKAQEKW
LKEKEESNKKAQEELANHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=518059 JDY60_RS06610 WP_200370434.1 1397479..1399461(-) (amiA3) [Streptococcus oralis strain SF100]
ATGAAAAGTTCAAAACTACTTGCCCTTGCGGGTGTGACGTTATTGGCAGCTGCGACTCTTGCAGCCTGCTCTGGATCAAG
TTCAAATGCTAAAGGTGAGAAAACATTCTCATACATTTACGAAACGGATCCTGATAACCTAAACTATTTGACAACTGGTA
AGGCAGCTACAGCAAATATTACTAGTAACGTTATCGATGGCTTGCTTGAAAATGACCGCTATGGTAACTTTGTACCGTCT
ATGGCTGAGGATTGGTCTGTATCTAAGGATGGATTGACTTATACGTATACACTCCGAAAGGATGCAAAATGGTATACATC
TGAAGGTGAGGAGTATGCAGAAGTTAAAGCTCAAGACTTTGTAACTGGTCTTAAGTATGCTGCTGATAAGAAATCAGATG
GTCTTTATCTGGTTCAGGAATCTATCAAGGGATTGGATGCTTATGTCAAAGGAGAAATTACAGATTTTTCTCAAGTAGGA
ATCAAAGCTCTTGATGATTATACCGTTCAATACACATTGAACAAGCCAGAAAGTTTCTGGAATTCTAAGACAACAATGGG
TGTTCTGGCTCCTGTTAATGAAGAATTTTTGAACTCTAAAGGGGATGACTTTGCTAAAGGTACGGACCCAAGTAGTATTC
TCTATAATGGACCATTCTTACTCAAATCAATCGTAGCCAAATCATCAGTCGAGTTCGAAAAGAATCCAAACTATTGGGAC
AAAGACAATGTTCATCTTGATAAAGTGAAATTATCCTTCTGGGATGGCCAAGATACTAATAAGCCAACTGAAGCTTTCAA
AGACGGTAGCTTTACAATGGCTCGCCTCTTCCCAACAAGTGCTAGTTACTCAGAGACTGAAAAAGCATTCAAAGACAATA
TCGTTTATACACAACAAGACTCTACTACTTATTTAGTAGGCACAAATATCGATCGTCAGTCTTATAAGTACACTTCTAAG
ACAACAGATGAGGAAAAAACATCAACCAAGAAGGCCCTTTTGAATAAGGACTTCCGTCAAGCTATTGCATTTGGTTTTGA
CAGAACAGCCTACGCTTCTCAAGTAAATGGTGCAAGCGGGGCTACTAAACTGCTTCGTAATTTGTTTGTTCCCCCTACAT
TTGTACAGGCAGATGGGAAAAACTTTGGGGAATTAGTTAAGGAAAAATTGGTGACCTATGGAGATGAGTGGAGCAACGTA
AACTTGGATGATGCCCAAGATGGACTCTACAATCCTGACAAAGCCAAAGCAGAGTTCGCTAAAGCTAAGGCGGCCCTTCA
AGCGGAAGGTGTGAAATTCCCAATCCACTTGGATATGCCTGTAGATCAAACCAATACAACAAAAGTTCAACGTGTTCAAT
CTTTTAAACAGTCAGTTGAAGAAAATCTAGGATCAGATAATGTGGTTATCGACATCCAACAGCTCCAAAAAGATGATGTT
CAAAACATTACCTACTTCGCTGAAACTGCGGCTGGAGAAGACTGGGATATCTCAGATAACGTGGGTTGGTCTCCAGACTA
TATCGATCCATCTACTTATCTTGATATTATCAAGCCTTCTGTAGGAGAAAATACGAAAACATATCTAGGATTTGATTCTG
GGACAAACAACGCTGCGGCTAAGCAAGTCGGTTTAGAAGACTACGAAAAAATGGTTGTGGAAGCTGGTGAAGAAACTACT
GATGTTTCAAAACGTTATGAGAAATATGCTGCTGCCCAAGCTTGGTTGACAGACAGTGCCTTGCTCATTCCAACAACTTC
TCAAACTGGTCGTCCAATGTTGTCTAAGATGGTACCATTTACACTTCCATTTGCATACTCTGGTAACAAGGGTATGAGCG
AAGCCCTTTTGTACAAATATCTAGAAGTACAAGATAAGGCAGTGACAACAGAAGAATACCAAAAAGCTCAAGAAAAATGG
TTGAAAGAAAAAGAAGAGTCAAATAAAAAGGCCCAAGAAGAACTCGCAAACCATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

60.212

100

0.603
  amiA Streptococcus salivarius strain HSISS4

59.909

100

0.6
  amiA3 Streptococcus thermophilus LMG 18311

59.607

100

0.597