Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   JDY60_RS03145 Genome accession   NZ_CP066172
Coordinates   659699..660508 (+) Length   269 a.a.
NCBI ID   WP_200371377.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 654699..665508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS03125 (JDY60_03125) pta 655356..656330 (+) 975 WP_084859882.1 phosphate acetyltransferase -
  JDY60_RS03130 (JDY60_03130) mutY 656413..657591 (+) 1179 WP_200371371.1 A/G-specific adenine glycosylase -
  JDY60_RS03135 (JDY60_03135) micA 657648..658355 (+) 708 WP_200371373.1 response regulator YycF Regulator
  JDY60_RS03140 (JDY60_03140) micB 658348..659697 (+) 1350 WP_200371375.1 cell wall metabolism sensor histidine kinase VicK Regulator
  JDY60_RS03145 (JDY60_03145) vicX 659699..660508 (+) 810 WP_200371377.1 MBL fold metallo-hydrolase Regulator
  JDY60_RS03150 (JDY60_03150) - 660648..661943 (+) 1296 WP_200371379.1 AAA family ATPase -
  JDY60_RS03155 (JDY60_03155) - 661940..662563 (+) 624 WP_200371381.1 retron system putative HNH endonuclease -
  JDY60_RS03160 (JDY60_03160) - 662729..663958 (-) 1230 WP_200371383.1 transposase -
  JDY60_RS03165 (JDY60_03165) - 664043..664390 (-) 348 WP_200371385.1 thioredoxin -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29931.92 Da        Isoelectric Point: 6.3426

>NTDB_id=518042 JDY60_RS03145 WP_200371377.1 659699..660508(+) (vicX) [Streptococcus oralis strain SF100]
MSEKGFKYSILASGSSGNSFYLETPKKKILVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAAAPQFYRFMKDDKSFVMLTDTGYVSDRMAG
IVENADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKIYDTSPDTATPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=518042 JDY60_RS03145 WP_200371377.1 659699..660508(+) (vicX) [Streptococcus oralis strain SF100]
ATGAGTGAAAAAGGCTTTAAATACAGTATTTTAGCATCAGGTTCCAGTGGAAATTCCTTTTATCTGGAAACCCCAAAAAA
GAAAATCCTAGTAGATGCAGGCCTGTCTGGTAAGAAAATTACAAGTCTGCTAGCTGAAATCAATCGCAAACCAGAAGATC
TGGATGCGATTTTGATTACGCATGAGCACTCAGACCATATCCATGGAGTCGGTGTCTTGGCTCGCAAATATGGTATGGAT
CTTTACGCCAATGAAAAGACTTGGCAGGCTATGGAAAATAGCAAGTACCTCGGTAAGGTGGATTCATCGCAGAAACACAT
TTTTGAAATGGGAAAAACCAAAACTTTTGGCGATATCGACATCGAGAGTTTTGGGGTTAGTCATGATGCCGCAGCACCCC
AGTTTTATCGCTTTATGAAGGATGATAAGAGTTTTGTCATGTTGACTGACACAGGTTATGTTAGTGATCGTATGGCAGGA
ATTGTTGAGAATGCTGACGGTTATCTCATCGAATCCAACCACGACGTGGAAATCTTACGAGCTGGATCTTATGCTTGGCG
ACTCAAACAACGAATCCTATCGGATCTCGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGCACTAAGAAAATCTACCTTGGGCATTTATCTAAGGAGAACAATATCAAGGAACTGGCTCACATGACCATGGTCAAT
CAGCTAGCACAAGCTGATCTGGGAGTTGGGGTAGACTTTAAGATATATGATACCTCACCAGATACCGCAACACCATTGAC
AGATATATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

78.81

100

0.788