Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   JDY60_RS01805 Genome accession   NZ_CP066172
Coordinates   379250..381208 (+) Length   652 a.a.
NCBI ID   WP_000748544.1    Uniprot ID   A0AAW7W8H6
Organism   Streptococcus oralis strain SF100     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 374250..386208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS01780 (JDY60_01780) - 374392..374904 (+) 513 WP_000892233.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  JDY60_RS01785 (JDY60_01785) - 374888..375538 (+) 651 WP_200371096.1 DUF1803 domain-containing protein -
  JDY60_RS01790 (JDY60_01790) - 375640..375840 (+) 201 WP_000051185.1 CsbD family protein -
  JDY60_RS01795 (JDY60_01795) - 375873..377318 (-) 1446 WP_200371098.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  JDY60_RS01800 (JDY60_01800) - 377425..379047 (+) 1623 WP_000064199.1 polysaccharide biosynthesis protein -
  JDY60_RS01805 (JDY60_01805) amiA 379250..381208 (+) 1959 WP_000748544.1 peptide ABC transporter substrate-binding protein Regulator
  JDY60_RS01810 (JDY60_01810) - 381354..382448 (+) 1095 WP_000031951.1 cystathionine gamma-synthase -
  JDY60_RS01815 (JDY60_01815) - 382456..383622 (+) 1167 WP_000521336.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72894.99 Da        Isoelectric Point: 4.7039

>NTDB_id=518036 JDY60_RS01805 WP_000748544.1 379250..381208(+) (amiA) [Streptococcus oralis strain SF100]
MKKSKAKYLTLASVVLSAGILLSACGNSSSATKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWYTYEGEEYAPVTAQDFVTGLKYAADKKSEALYLVQDSVAGLDDYINGKTSDFSTVGV
KAIDDQTVQYTLTRPESYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYNGPFLMKSFVSKSVIEFKKNPNYWDEK
NVFVDDVKLAYYDGSDQDALARNFVEGVYSYARLYPNSSSFEGIKEKNKDNIIYSMQNATSYYLNFNLDRKSYNFTSKSS
DIEKKSTQEAVLNKNFRQAFNYAYNRTAYGAQSQGEDGATKIIRNLVVPPTFVSINGKDFGDVVSEKMVNYGQEWQGINF
ADAQDPYYNPDKAKAKFAEAKKELEAKGVQFPIHLDVSVDQSAKKGVLEASSLKQSIESVLGAENVVIDIQQLSTDDFDN
SSYLAQTAAQKDFDIYNGGWSADYLDPSSYLDILNVNNGGMLQNIGLEPGEVNDKAKAVGLDTYTQMLEEANKEQEPAKR
YEKYAEIQAWLVDSALAIPNVSQGGTPTLRKTVPFSSPFSQAGNKGVESYKYLKLQDKTVTTDEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=518036 JDY60_RS01805 WP_000748544.1 379250..381208(+) (amiA) [Streptococcus oralis strain SF100]
ATGAAAAAGTCTAAGGCCAAGTATCTGACACTTGCAAGTGTCGTGTTAAGCGCAGGTATCTTACTGAGCGCATGTGGAAA
TTCAAGTAGCGCTACTAAAACATATAACTATGTTTATTCGAGCGATCCATCTAGTTTGAACTATCTTGCAGAAAACCGTG
CAACAACCAATGACATCGTGACCAATTTGGTGGATGGGTTGATGGAAAATGACCAATACGGTAACTATGTTCCATCATTG
GCAGAGGATTGGACTGTTTCTCAGGACGGTTTGACCTATACTTACAAATTGCGTAAGGATGCAAAATGGTATACTTATGA
GGGTGAAGAATACGCCCCTGTAACGGCCCAAGACTTTGTGACAGGTTTGAAATATGCTGCTGATAAAAAATCCGAAGCCT
TGTACCTGGTTCAAGACTCTGTAGCAGGTTTGGATGACTATATCAACGGGAAAACAAGTGACTTTTCAACTGTCGGTGTT
AAGGCGATTGACGACCAAACAGTTCAGTACACTTTGACACGTCCAGAATCTTATTGGAATTCTAAAACAACTTCAACCAT
TCTCTTCCCTGTCAATGCAGATTTCTTAAAATCAAAAGGGGATGACTTTGGTAAGGTAGACCCTTCTAGTATTTTGTACA
ATGGACCTTTCTTAATGAAATCTTTTGTTTCAAAATCTGTTATCGAATTCAAGAAAAATCCCAACTACTGGGATGAAAAA
AATGTCTTTGTGGATGATGTGAAATTGGCCTATTATGATGGTAGTGACCAAGATGCACTAGCACGTAACTTTGTAGAAGG
AGTATACAGCTATGCGCGTCTCTACCCAAATAGCTCAAGCTTTGAAGGCATTAAAGAGAAGAACAAGGATAACATCATCT
ATAGTATGCAAAACGCAACTTCTTATTACTTGAACTTCAACTTGGACAGAAAGTCTTATAACTTCACGTCTAAATCTTCA
GATATCGAAAAGAAATCAACCCAAGAAGCAGTTCTGAATAAAAACTTCCGTCAAGCCTTCAACTATGCTTATAACCGTAC
AGCCTATGGAGCACAATCTCAAGGGGAGGACGGAGCAACAAAGATTATTCGTAACTTGGTTGTACCTCCTACGTTTGTAA
GTATCAACGGAAAAGACTTTGGCGATGTTGTTTCAGAAAAGATGGTCAACTATGGCCAAGAATGGCAAGGAATCAACTTT
GCGGACGCACAAGATCCATACTACAATCCTGACAAGGCTAAAGCTAAATTTGCAGAAGCTAAGAAAGAATTGGAAGCTAA
GGGTGTGCAATTCCCAATCCACTTGGATGTATCTGTAGACCAATCAGCTAAAAAAGGTGTACTTGAAGCGAGCTCTTTAA
AACAATCCATCGAATCTGTTCTAGGAGCTGAGAATGTGGTTATCGATATCCAACAGCTATCAACAGATGACTTTGACAAC
TCTAGCTACCTCGCTCAAACCGCAGCTCAAAAAGACTTTGATATCTATAATGGCGGTTGGAGTGCTGACTACTTGGACCC
ATCAAGCTATCTTGATATCTTAAATGTCAATAACGGTGGTATGTTGCAAAACATTGGTCTAGAACCAGGTGAGGTCAATG
ACAAGGCTAAGGCGGTTGGTCTGGATACCTACACTCAAATGCTAGAAGAAGCGAACAAGGAGCAAGAACCAGCAAAACGT
TATGAAAAATATGCTGAAATTCAAGCTTGGCTCGTTGATAGCGCCCTTGCAATTCCAAACGTTTCTCAGGGTGGAACACC
GACCTTGAGAAAGACAGTTCCATTCTCATCACCATTCTCACAAGCTGGAAATAAGGGTGTCGAATCATACAAGTATCTCA
AGTTACAAGATAAGACTGTAACGACTGATGAGTATGAAAAAGCTAAAGAAAAATGGCTGAAAGAAAAAGAAGAATCAAAT
AAAAAAGCCCAAGAAGAACTGGCAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.383

100

0.569
  amiA3 Streptococcus thermophilus LMG 18311

55.842

100

0.564
  amiA3 Streptococcus thermophilus LMD-9

55.539

100

0.561