Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ITG10_RS06310 Genome accession   NZ_CP066149
Coordinates   1400926..1401558 (+) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio sp. ED004     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1395926..1406558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG10_RS06290 (ITG10_06220) - 1397640..1398110 (+) 471 WP_017632110.1 TIGR02444 family protein -
  ITG10_RS06295 (ITG10_06225) - 1398405..1399397 (+) 993 WP_017632109.1 hydrolase -
  ITG10_RS06300 (ITG10_06230) - 1399527..1399739 (+) 213 WP_017632108.1 YheU family protein -
  ITG10_RS06305 (ITG10_06235) - 1399817..1400686 (+) 870 WP_017632107.1 phosphoribulokinase -
  ITG10_RS06310 (ITG10_06240) crp 1400926..1401558 (+) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  ITG10_RS06315 (ITG10_06245) - 1401744..1402535 (-) 792 WP_017632106.1 DUF1338 domain-containing protein -
  ITG10_RS06320 (ITG10_06250) astD 1402750..1404207 (-) 1458 WP_017632105.1 succinylglutamate-semialdehyde dehydrogenase -
  ITG10_RS06325 (ITG10_06255) astA 1404247..1405266 (-) 1020 WP_017632104.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=517872 ITG10_RS06310 WP_004410522.1 1400926..1401558(+) (crp) [Vibrio sp. ED004]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=517872 ITG10_RS06310 WP_004410522.1 1400926..1401558(+) (crp) [Vibrio sp. ED004]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTAGGCTTGTTCGAAGAAGAC
CAAGAGCGTACTGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTAGCTGAAATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGACATCCTGATGCGCCTTTCAGCGCAAATGGCAAGCCGCCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTAAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467