Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JC616_RS24255 Genome accession   NZ_CP066126
Coordinates   5279497..5280828 (-) Length   443 a.a.
NCBI ID   WP_227105942.1    Uniprot ID   -
Organism   Chromobacterium rhizoryzae strain 32279     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5274497..5285828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC616_RS24225 - 5274618..5275088 (+) 471 WP_146176767.1 hypothetical protein -
  JC616_RS24230 - 5275095..5276120 (-) 1026 WP_227105937.1 transporter substrate-binding domain-containing protein -
  JC616_RS24235 alr 5276247..5277476 (+) 1230 WP_227105938.1 alanine racemase -
  JC616_RS24240 - 5277629..5277922 (+) 294 WP_107802085.1 hypothetical protein -
  JC616_RS24245 - 5277990..5278205 (-) 216 WP_107801369.1 YdcH family protein -
  JC616_RS24250 - 5278437..5279234 (-) 798 WP_227105940.1 transporter substrate-binding domain-containing protein -
  JC616_RS24255 pilR 5279497..5280828 (-) 1332 WP_227105942.1 sigma-54 dependent transcriptional regulator Regulator
  JC616_RS24260 - 5280821..5282374 (-) 1554 WP_227105944.1 PAS domain-containing sensor histidine kinase -
  JC616_RS24265 parC 5282371..5284740 (-) 2370 WP_227108624.1 DNA topoisomerase IV subunit A -
  JC616_RS24270 - 5284908..5285375 (+) 468 WP_227105946.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 48704.81 Da        Isoelectric Point: 5.5904

>NTDB_id=517656 JC616_RS24255 WP_227105942.1 5279497..5280828(-) (pilR) [Chromobacterium rhizoryzae strain 32279]
MAKSSLRVLVIDDEPDIRELLELTLIKMGLDVATAASVGAAKLSLNSQPFDLALTDMRLPDGEGIEVVRHIAEQGLDVPI
AVITAYGNTDNAVLAMKAGAFDYLQKPVSLAQLRSLVKSVLRVDNGKPGAAVRLDGESPAIQEALRLVGKLARSQAAVYL
SGESGTGKEQAARMIHEHSARAERPFIPVNCGAIPETLMESEFFGYRKGAFTGADNDRDGFFQQANGGTLFLDEVADLPL
AMQVKLLRAIQEKKVRRLGNAQEEAVDVRIICATHKDLAARVDAGSFRQDLYYRLNVLPLRMPPLRELREDLPRYIAGLL
ERFSPDEKPRLAPAALKALLEYNYPGNFRELENILERAVALANDARIELPDLQLLPGDHGGHGDGEAPTCADGEALQDFL
DRVEREAILKALESTRFNRTQAAKQLGVTFRSMRYRMERLGIK

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=517656 JC616_RS24255 WP_227105942.1 5279497..5280828(-) (pilR) [Chromobacterium rhizoryzae strain 32279]
ATGGCTAAATCCTCCCTGCGCGTGCTGGTGATCGACGACGAACCGGACATCCGCGAACTGCTGGAACTGACCCTGATCAA
GATGGGGCTGGACGTGGCCACCGCCGCCAGCGTCGGCGCCGCCAAACTCAGCCTGAACAGCCAGCCCTTCGACCTGGCGC
TGACCGATATGCGCCTGCCGGACGGCGAGGGCATCGAGGTGGTGCGCCATATCGCCGAGCAGGGGCTGGACGTGCCCATC
GCGGTGATCACCGCCTACGGCAACACCGACAACGCGGTGCTGGCGATGAAGGCGGGCGCCTTCGACTACCTGCAAAAACC
GGTCAGCCTGGCGCAATTGCGCAGCCTGGTGAAATCCGTGCTGCGCGTGGACAACGGCAAGCCCGGCGCCGCGGTGCGGC
TGGACGGCGAATCCCCGGCGATCCAGGAAGCCTTGCGCCTGGTCGGCAAGCTGGCGCGCAGCCAGGCCGCGGTCTACCTC
AGCGGCGAGTCCGGCACCGGCAAGGAACAGGCGGCGCGGATGATACACGAGCACAGCGCGCGCGCCGAACGGCCGTTCAT
TCCGGTCAACTGCGGCGCCATTCCGGAAACGCTGATGGAAAGCGAATTCTTCGGCTACCGCAAAGGCGCGTTCACCGGCG
CCGACAACGACCGCGACGGCTTCTTTCAGCAAGCCAACGGCGGCACGCTGTTTCTGGACGAAGTGGCCGATCTGCCGCTG
GCGATGCAGGTCAAGCTGCTGCGCGCGATTCAGGAAAAGAAAGTGCGCCGCCTCGGCAACGCCCAGGAAGAAGCGGTGGA
CGTGCGCATCATCTGCGCCACCCACAAAGACCTGGCGGCGCGGGTGGACGCCGGCAGCTTCCGCCAAGACCTGTATTACC
GGCTGAACGTGCTGCCGCTGCGCATGCCGCCGCTGCGCGAACTGCGCGAGGATCTGCCGCGCTACATCGCCGGCCTGCTG
GAACGCTTTTCCCCCGATGAAAAACCGCGGCTGGCGCCGGCGGCGCTCAAGGCCTTGCTGGAATACAATTACCCGGGCAA
TTTCCGCGAACTGGAAAACATCCTGGAGCGCGCGGTGGCGCTGGCCAACGACGCCCGCATCGAATTGCCGGACCTGCAAC
TGCTGCCTGGCGATCACGGCGGCCACGGCGACGGCGAAGCGCCGACATGCGCCGACGGCGAGGCGCTGCAGGACTTTCTG
GACCGGGTGGAGCGCGAAGCGATACTCAAGGCGCTGGAAAGCACCCGCTTCAACCGCACCCAGGCCGCCAAGCAGCTGGG
CGTGACCTTCCGCTCCATGCGTTATCGGATGGAAAGGCTGGGCATCAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(400-439)

Sigma-54 interaction domain (Sigma54_activat)

(136-300)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

57.753

100

0.58
  pilR Acinetobacter baumannii strain A118

44.086

100

0.463
  luxO Vibrio cholerae strain A1552

36.712

100

0.368