Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   JC624_RS16180 Genome accession   NZ_CP066124
Coordinates   3343880..3344284 (-) Length   134 a.a.
NCBI ID   WP_227062060.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 32292     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3338880..3349284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC624_RS16150 - 3338964..3339233 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  JC624_RS16155 rapZ 3339230..3340081 (-) 852 WP_002117179.1 RNase adapter RapZ -
  JC624_RS16160 panC 3340105..3340953 (-) 849 WP_227062058.1 pantoate--beta-alanine ligase -
  JC624_RS16165 panB 3340957..3341766 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  JC624_RS16170 folK 3341812..3342294 (-) 483 WP_032057517.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  JC624_RS16175 pcnB 3342291..3343754 (-) 1464 WP_005066269.1 polynucleotide adenylyltransferase PcnB -
  JC624_RS16180 comEA 3343880..3344284 (-) 405 WP_227062060.1 ComEA family DNA-binding protein Machinery gene
  JC624_RS16185 mazG 3344253..3345059 (-) 807 WP_227062062.1 nucleoside triphosphate pyrophosphohydrolase -
  JC624_RS16190 - 3345172..3345945 (+) 774 WP_227062064.1 SDR family oxidoreductase -
  JC624_RS16195 - 3346465..3347778 (+) 1314 WP_227063884.1 COG3014 family protein -
  JC624_RS16200 - 3347798..3348208 (+) 411 WP_063098121.1 YcfL family protein -
  JC624_RS16205 lpoB 3348262..3348864 (+) 603 WP_227062066.1 penicillin-binding protein activator LpoB -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15530.80 Da        Isoelectric Point: 10.6823

>NTDB_id=517585 JC624_RS16180 WP_227062060.1 3343880..3344284(-) (comEA) [Acinetobacter pittii strain 32292]
MQLSMNLWKNKHNIFIILFWSLISSTLVQAQSFDQNFKEWKAKQQRYDQKLSMQRSSHSNSPKNSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPTIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=517585 JC624_RS16180 WP_227062060.1 3343880..3344284(-) (comEA) [Acinetobacter pittii strain 32292]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAATATTTTCATTATTTTATTTTGGAGCCTGATCTCATCAACGCT
CGTTCAGGCTCAATCTTTTGACCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGAGGTATGATCAGAAGTTGAGCATGC
AGCGGTCCTCTCATTCTAACAGTCCAAAAAATTCAGTTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAACCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

69.343

100

0.709
  comEA Acinetobacter baumannii D1279779

68.613

100

0.701
  comEA Acinetobacter baylyi ADP1

43.548

92.537

0.403