Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   JC624_RS04470 Genome accession   NZ_CP066124
Coordinates   946341..948773 (+) Length   810 a.a.
NCBI ID   WP_227062924.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 32292     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 945572..953455 946341..948773 within 0


Gene organization within MGE regions


Location: 945572..953455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC624_RS04465 lolD 945572..946258 (+) 687 WP_002118798.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  JC624_RS04470 comA/comEC 946341..948773 (+) 2433 WP_227062924.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JC624_RS04475 - 948726..949709 (-) 984 WP_080759612.1 lysophospholipid acyltransferase family protein -
  JC624_RS04480 sppA 949843..950859 (+) 1017 WP_227062926.1 signal peptide peptidase SppA -
  JC624_RS04485 - 950883..951683 (+) 801 WP_017385815.1 alpha/beta fold hydrolase -
  JC624_RS04490 purN 951759..952388 (-) 630 WP_227062927.1 phosphoribosylglycinamide formyltransferase -
  JC624_RS04495 purM 952385..953455 (-) 1071 WP_005073084.1 phosphoribosylformylglycinamidine cyclo-ligase -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 92688.24 Da        Isoelectric Point: 9.2347

>NTDB_id=517574 JC624_RS04470 WP_227062924.1 946341..948773(+) (comA/comEC) [Acinetobacter pittii strain 32292]
MLKLILMGWVVGIAFMGIDIPLIMQYGWLGKVLLVMGFIFYIFKRNIFLNRPIFKTIYCLVCAISLFTVGHQYAQNALNQ
RLELRQMQPKSLDIVVYVDRISEEKEGKTQQPVQVLGQSLHPVNWLLYLKNQKVISAIDEPKLQLGHYYRISGKTKPAHS
YAVAGVLDQEQWFIQQNIMSGFSVQHIEPLSSDEIYQLGYQHHLKEQQKFFNRQKLNVEKLRLTFRLILKQSPLQNKGLL
LALLTGDESLLNDEIKNQFKELGISHLLAISGPHVLIFAIMLSWVLHQLIRRYYPQLYLRQPKQIWTMIPLCFGVLIYTA
FVGFEIPALRTLLSVFLFASLLLIKVPVKSFSLLVYSASLLLLFDPFSVLSAGFWLSYGSCFILLRIYQTIEQAPNLVST
SLLSRIILFSKILIESQGKIFIALCPLMLIFFQQVSWVAPFTNIIAVPLLGGVIVPLNIFAACVWLIFKSFGNLLFQIND
VLISIVLSCFNLLEKLSLPLQGFSLTPLDLVCLSFVIIILFLPRGVLPKSWGLICCLPLIIPDKSSQQIQLNIIDVGQGQ
SIFLQHPQQTWLIDTGGSYDEKAFSIGQNVVIPYLRQKGIKQLDHVVLSHLDQDHSGAFPSIAQTFPIKQVISNELWKEQ
ITEPFTYCHQGQKWQYPQLDIEILWPKEKDLNLVSSNQNQYSCVVYIHLKQINGYQNYLIMGDAGWEAEYQLMKEYPDLK
VDVLVLGHHGSKHSSAYDFLATLKPKLVVASAGFNNRYGHPSKEVLARVQALNLPFKSTVEQGTLSFVSRNHQMVLYTRR
FERTWLHRNL

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=517574 JC624_RS04470 WP_227062924.1 946341..948773(+) (comA/comEC) [Acinetobacter pittii strain 32292]
ATGTTAAAGCTTATTTTAATGGGGTGGGTTGTAGGTATTGCATTTATGGGGATAGATATCCCTTTAATAATGCAATATGG
GTGGTTAGGTAAAGTCTTGCTTGTTATGGGCTTTATTTTTTATATTTTTAAGAGAAATATTTTCTTAAATCGCCCCATAT
TTAAAACCATTTACTGTCTAGTCTGTGCTATTAGTCTCTTTACTGTAGGACATCAATATGCTCAGAATGCCTTAAATCAA
AGATTAGAACTGCGACAAATGCAGCCTAAATCTTTAGATATTGTTGTGTATGTCGACCGTATAAGTGAAGAAAAAGAAGG
TAAAACACAACAACCCGTTCAGGTACTAGGGCAGTCCTTACATCCCGTTAATTGGCTATTATATTTAAAAAATCAAAAAG
TAATCTCAGCCATAGATGAGCCAAAATTACAATTAGGTCATTATTATAGAATTTCTGGCAAAACCAAACCTGCTCATAGT
TACGCAGTGGCTGGTGTTCTTGACCAAGAACAGTGGTTCATTCAACAAAATATAATGTCCGGTTTTAGTGTTCAGCATAT
TGAGCCTTTAAGCTCTGATGAAATTTATCAGTTGGGTTATCAACATCATTTAAAAGAGCAACAAAAATTCTTTAACAGAC
AAAAGTTAAATGTAGAAAAGTTGCGCCTAACATTTAGATTAATATTAAAACAATCTCCTTTGCAAAATAAAGGACTGTTA
TTAGCTTTGTTAACAGGGGACGAAAGTCTCTTAAATGATGAGATTAAAAATCAATTTAAGGAATTAGGAATCTCTCATTT
GTTAGCCATTTCAGGGCCTCATGTACTCATTTTTGCCATCATGTTGTCTTGGGTATTACATCAATTAATAAGACGTTATT
ATCCGCAGCTTTATTTGCGTCAACCTAAACAAATATGGACCATGATTCCATTATGTTTCGGTGTTTTAATTTATACGGCA
TTTGTTGGTTTTGAAATTCCCGCCTTAAGAACTTTACTCTCAGTATTTTTATTTGCTTCTTTGTTATTGATTAAAGTGCC
TGTTAAGTCATTTTCACTCTTGGTTTATAGTGCAAGTCTACTTTTACTTTTCGATCCCTTCAGTGTTTTATCAGCAGGCT
TTTGGCTGTCTTATGGTTCTTGCTTTATTTTATTACGGATTTATCAAACTATAGAGCAGGCTCCAAATCTTGTTTCAACT
AGTCTGTTATCTAGAATCATTCTTTTCAGTAAAATTTTAATTGAATCTCAAGGCAAAATATTTATTGCCTTATGTCCTTT
AATGCTGATTTTCTTTCAACAGGTTTCATGGGTTGCTCCTTTTACAAATATTATTGCTGTTCCTCTGTTAGGAGGAGTTA
TTGTTCCTTTAAATATTTTTGCAGCTTGTGTATGGCTTATTTTTAAATCATTCGGAAATTTACTTTTTCAAATTAATGAC
GTGCTGATTAGTATAGTACTGTCATGTTTTAATCTTTTAGAAAAGTTATCTCTACCATTACAAGGTTTTAGCCTCACACC
ACTTGATTTAGTGTGCCTTAGCTTCGTTATTATTATCTTATTTTTACCGCGTGGGGTTTTACCCAAATCTTGGGGGCTAA
TATGCTGTTTACCCTTGATCATTCCAGATAAGTCGTCCCAGCAAATTCAATTAAATATTATAGATGTAGGACAGGGGCAA
TCTATATTCTTACAGCACCCGCAGCAGACATGGTTAATTGATACGGGTGGTTCTTATGATGAGAAAGCTTTTAGTATTGG
TCAAAATGTGGTGATTCCATATTTACGCCAAAAGGGAATTAAACAACTGGATCACGTCGTACTATCTCATCTTGATCAAG
ATCATAGCGGAGCATTTCCTTCTATTGCTCAGACTTTTCCTATTAAACAAGTCATATCAAATGAATTATGGAAAGAGCAA
ATTACAGAACCATTTACTTATTGTCATCAAGGGCAAAAATGGCAATATCCACAATTAGATATTGAAATTCTTTGGCCTAA
AGAAAAAGATTTAAACTTAGTTTCTTCAAATCAAAACCAATATTCTTGTGTGGTTTATATTCACTTAAAACAGATAAATG
GTTATCAAAATTATTTAATTATGGGTGATGCAGGGTGGGAAGCAGAATATCAACTCATGAAAGAATATCCTGATTTAAAG
GTAGATGTTTTGGTATTAGGTCATCATGGAAGTAAACATAGTTCGGCTTATGACTTTTTAGCGACTCTAAAACCAAAGCT
TGTTGTTGCTTCTGCTGGCTTTAATAATCGTTATGGTCATCCAAGCAAAGAGGTTTTAGCGAGAGTACAAGCACTTAATC
TTCCGTTTAAAAGCACAGTTGAACAAGGAACATTAAGCTTTGTATCTCGCAATCATCAGATGGTTTTATACACTCGTCGT
TTCGAGCGTACTTGGCTTCACCGGAATTTGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(243-522)

Metallo-beta-lactamase superfamily (Lactamase_B)

(555-643)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baumannii D1279779

69.839

99.877

0.698
  comA/comEC Acinetobacter baumannii strain A118

69.221

99.877

0.691
  comA/comEC Acinetobacter baylyi ADP1

48.585

100

0.488