Detailed information NTG0517552

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I9018_RS27700
• Genome accession: NZ_CP066123
• Coordinates: 6044723..6045595 (+)
• Length: 290 a.a.
• NCBI ID: WP_241108038.1
• Uniprot ID: -
• Organism: Pseudomonas sp. MPFS
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6039723..6050595

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I9018_RS27685 (I9018_27595)	-	6042240..6042596 (-)	357	WP_068575524.1	BON domain-containing protein	-
I9018_RS27690 (I9018_27600)	-	6042812..6043228 (-)	417	WP_124347366.1	pilin	-
I9018_RS27695 (I9018_27605)	pilC	6043503..6044720 (+)	1218	WP_241108037.1	type II secretion system F family protein	Machinery gene
I9018_RS27700 (I9018_27610)	pilD	6044723..6045595 (+)	873	WP_241108038.1	A24 family peptidase	Machinery gene
I9018_RS27705 (I9018_27615)	coaE	6045592..6046215 (+)	624	WP_241108039.1	dephospho-CoA kinase	-
I9018_RS27710 (I9018_27620)	yacG	6046212..6046415 (+)	204	WP_068575529.1	DNA gyrase inhibitor YacG	-
I9018_RS27715 (I9018_27625)	-	6046433..6046648 (-)	216	WP_022641062.1	hypothetical protein	-
I9018_RS27720 (I9018_27630)	-	6046712..6047401 (-)	690	WP_068575530.1	energy-coupling factor ABC transporter permease	-
I9018_RS27725 (I9018_27635)	-	6047398..6047865 (-)	468	WP_068575531.1	hypothetical protein	-
I9018_RS27730 (I9018_27640)	-	6048018..6048647 (+)	630	WP_068575532.1	DUF1780 domain-containing protein	-
I9018_RS27735 (I9018_27645)	-	6048836..6049009 (+)	174	WP_068575533.1	DUF3094 family protein	-
I9018_RS27740 (I9018_27650)	-	6049070..6050368 (+)	1299	WP_068575534.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32080.19 Da
• Isoelectric Point: 6.8225

>NTDB_id=517552 I9018_RS27700 WP_241108038.1 6044723..6045595(+) (pilD) [Pseudomonas sp. MPFS]
MSLPEVLSLYPLVFVMTGLLLGLIVGSFLNVLVWRLPQMLERDWRAQAHEILGLPAEPETAPYNLLLPHSHCPSCGTPIR
PWQNVPLISYLWLRGRCAHCQASISLRYPLTELACGLLSAFVAWHFGFGWQAGLMLLLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNSFGIFTDLENALWGAAIGYLFLWSVFWLFKLLTGKDGLGHGDFKLLALLGAWGGWQILPLTLLLASLTG
ALLGTLILRLRQAKGSTPIPFGPFLAIAGWIALLWGGQITDFYLQFVGFQ

Nucleotide

• Length: 873 bp

>NTDB_id=517552 I9018_RS27700 WP_241108038.1 6044723..6045595(+) (pilD) [Pseudomonas sp. MPFS]
ATGTCCTTGCCTGAAGTCCTTAGCCTTTATCCCCTGGTATTCGTAATGACCGGCCTACTGCTGGGGCTGATCGTCGGCAG
TTTTCTCAATGTACTGGTCTGGCGTCTGCCACAGATGCTCGAGCGTGACTGGCGGGCCCAAGCCCATGAAATCCTGGGGC
TACCTGCGGAGCCTGAAACCGCTCCCTATAACCTGCTGTTGCCCCATTCCCATTGCCCCAGCTGCGGAACACCTATCCGC
CCCTGGCAGAATGTTCCGCTGATCAGCTATCTGTGGCTGCGTGGCCGCTGCGCCCATTGCCAAGCCAGCATCAGCCTGCG
CTATCCCCTGACCGAACTGGCTTGCGGCCTGCTCTCGGCGTTCGTAGCCTGGCATTTCGGTTTTGGCTGGCAAGCCGGCT
TGATGCTGCTTCTGAGCTGGGGCCTGCTGGCCATGAGCCTGATCGACGCCGACCATCAGTTGCTACCGGATGTACTGGTA
CTGCCGTTGCTGTGGCTGGGACTGATCGTCAACAGCTTCGGTATCTTCACAGACCTTGAGAATGCCCTGTGGGGCGCGGC
GATCGGCTACTTGTTCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGATGGCCTGGGCCATGGGGATT
TCAAGCTGCTGGCGCTGCTGGGTGCCTGGGGCGGTTGGCAGATCCTGCCGCTGACCCTGCTTCTGGCCTCCCTGACCGGG
GCGCTGCTGGGCACCCTCATATTGCGCTTGCGCCAGGCCAAAGGCTCGACGCCTATCCCCTTTGGCCCATTTCTGGCGAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTTTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.064	97.241	0.497
pilD	Vibrio campbellii strain DS40M4	48.936	97.241	0.476
pilD	Acinetobacter nosocomialis M2	50.936	92.069	0.469
pilD	Acinetobacter baumannii D1279779	50.562	92.069	0.466
pilD	Neisseria gonorrhoeae MS11	49.012	87.241	0.428