Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   I9018_RS09065 Genome accession   NZ_CP066123
Coordinates   1945696..1947927 (+) Length   743 a.a.
NCBI ID   WP_241109232.1    Uniprot ID   -
Organism   Pseudomonas sp. MPFS     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1940696..1952927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9018_RS09040 (I9018_09045) - 1941821..1942480 (+) 660 WP_124346164.1 transglutaminase family protein -
  I9018_RS09045 (I9018_09050) - 1942523..1943146 (+) 624 WP_068578027.1 glutathione S-transferase -
  I9018_RS09050 (I9018_09055) - 1943279..1944211 (+) 933 WP_241109231.1 ABC transporter ATP-binding protein -
  I9018_RS09055 (I9018_09060) - 1944208..1944987 (+) 780 WP_068578002.1 ABC transporter permease -
  I9018_RS09060 (I9018_09065) - 1945040..1945555 (-) 516 WP_124346166.1 DUF2062 domain-containing protein -
  I9018_RS09065 (I9018_09070) comA 1945696..1947927 (+) 2232 WP_241109232.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  I9018_RS09070 (I9018_09075) exbB 1948030..1948665 (+) 636 WP_068577997.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  I9018_RS09075 (I9018_09080) - 1948662..1949090 (+) 429 WP_068577995.1 biopolymer transporter ExbD -
  I9018_RS09080 (I9018_09085) lpxK 1949090..1950100 (+) 1011 WP_241109233.1 tetraacyldisaccharide 4'-kinase -
  I9018_RS09085 (I9018_09090) - 1950125..1950310 (+) 186 WP_056836870.1 Trm112 family protein -
  I9018_RS09090 (I9018_09095) kdsB 1950307..1951071 (+) 765 WP_068577991.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  I9018_RS09095 (I9018_09100) - 1951071..1951535 (+) 465 WP_068577989.1 low molecular weight protein-tyrosine-phosphatase -
  I9018_RS09100 (I9018_09105) murB 1951532..1952551 (+) 1020 WP_241109234.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81938.93 Da        Isoelectric Point: 10.4104

>NTDB_id=517543 I9018_RS09065 WP_241109232.1 1945696..1947927(+) (comA) [Pseudomonas sp. MPFS]
MRTGMLGLAAGLLALGFLPALPPAWWLWPMGILALMMLPFRTHPVAFFLFGLAWACTCAQWALDDRLASRLDGQTRWLEG
RVVGLPESGTGVVRFEVQDAQARRDRLPRRMRLSWRDGPQVRSGEHWRLAVTLRRPAGLLNLQGFDYEAWLLARRIGATG
TVKDGQLLAAARGAWRDGLRQRLLAVEAHGRAGGLAALVMGDGSGLAREDWQLLQDTGTVHLMVISGQHISLLAGVVYLA
VAGLARHGAWPERWPWLPWACALAFLAALGYGLLAGFDVPVQRSCVMVALVLLWRLRFRHLGAWWPLLLALDAVLLFEPL
ASLQPGFWLSFAAVAILVFTFAGRLGAWRWWQGWSRAQWLVAIGLLPSLLALGLPISLSGPVANLLAVPWISFLVLPPAL
LGCLLLPVPYLGEGILWLAGGLLDGLFRWLEVVARWSPAWMAPLLPWWLWVLSCLGAGLLLLPAGTPLRIFGWPLLLLVA
WPPPQRVPYGQAEVWQLDVGQGLSFILRTREHAMLYDAGARSGDFDLGERVVVPTLHRLAIRQLDLMLLSHADNDHAGGA
LAVQRALPVHLVRSGEPRELPAALQATPCESGVSWQWDGVRFSQWQWAHARDGNQASCVLLVEANGERLLLTGDIDVQAE
RAFLDSPLGVPVHWLQAPHHGSRTSSSRALLQRLAPGAVLISRGRGNAYGHPHPQVVARYRRQGVIIYDSAEQGALKLQL
GAFSKPYSVREQRRFWRAPPAMP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=517543 I9018_RS09065 WP_241109232.1 1945696..1947927(+) (comA) [Pseudomonas sp. MPFS]
ATGCGCACAGGGATGCTGGGGTTGGCCGCGGGGCTTCTGGCACTGGGTTTCCTGCCAGCCTTGCCGCCCGCCTGGTGGTT
GTGGCCGATGGGGATACTGGCATTGATGATGCTGCCGTTTCGTACACATCCGGTGGCATTTTTCCTGTTCGGCCTGGCTT
GGGCGTGCACGTGCGCGCAATGGGCGCTTGATGACCGCCTGGCCTCGCGACTGGATGGGCAGACCCGTTGGCTGGAGGGG
AGGGTCGTCGGTTTGCCGGAGAGCGGAACAGGGGTGGTACGTTTCGAGGTGCAGGATGCCCAGGCCCGGCGTGATCGGTT
GCCAAGGCGAATGCGCCTGAGCTGGCGTGATGGGCCGCAGGTCAGAAGTGGCGAGCACTGGCGCCTGGCGGTGACCTTGC
GGCGCCCGGCGGGCCTGCTCAATCTGCAGGGTTTCGACTACGAAGCCTGGTTGCTGGCCAGGCGGATTGGCGCCACCGGT
ACGGTCAAGGACGGCCAGCTATTGGCTGCGGCCCGTGGTGCCTGGCGTGATGGCTTGCGCCAGCGGTTATTGGCCGTCGA
GGCCCATGGGCGTGCCGGAGGGCTGGCTGCTCTGGTGATGGGGGACGGTTCCGGGTTGGCGCGTGAGGATTGGCAGCTGC
TGCAGGACACTGGCACCGTGCACTTGATGGTGATCTCCGGGCAGCACATCAGCCTGTTGGCCGGGGTGGTTTACCTGGCC
GTGGCGGGATTGGCACGTCATGGCGCGTGGCCCGAGCGTTGGCCCTGGCTGCCCTGGGCTTGTGCCCTGGCATTCCTCGC
GGCCCTGGGTTACGGGCTGCTGGCCGGGTTCGACGTGCCCGTCCAGCGCTCTTGTGTGATGGTGGCGCTGGTCCTGCTCT
GGCGCTTGCGCTTTCGTCACCTGGGGGCCTGGTGGCCGTTGTTGCTGGCGCTTGATGCGGTCCTGCTGTTCGAACCCCTG
GCCAGCCTGCAACCGGGGTTCTGGTTGTCGTTCGCCGCGGTGGCGATCCTGGTCTTCACCTTCGCCGGGCGCCTGGGGGC
ATGGCGCTGGTGGCAAGGCTGGAGCCGCGCCCAGTGGTTGGTGGCCATCGGCCTCTTGCCATCGCTACTGGCCCTGGGCC
TGCCCATCAGCCTCAGTGGTCCAGTGGCCAATCTGCTGGCCGTTCCCTGGATCAGTTTTCTAGTACTGCCGCCAGCCTTG
TTGGGGTGCCTGCTGTTGCCCGTGCCCTATCTGGGAGAGGGAATACTGTGGCTGGCCGGTGGGTTGCTCGACGGGTTGTT
TCGTTGGCTGGAGGTGGTGGCCCGATGGTCCCCGGCTTGGATGGCACCCCTGCTTCCCTGGTGGCTCTGGGTCTTGTCCT
GCCTGGGTGCTGGCTTGTTGCTGTTGCCTGCTGGTACACCGTTGCGGATTTTCGGCTGGCCCTTGTTGTTGCTGGTGGCC
TGGCCACCGCCGCAGCGGGTGCCCTATGGCCAGGCCGAGGTCTGGCAGCTGGATGTGGGGCAGGGATTGTCATTCATCCT
GCGTACCAGGGAGCACGCGATGCTGTATGACGCCGGCGCCCGCAGCGGTGATTTCGACCTGGGGGAGCGAGTGGTGGTGC
CGACCTTGCATCGGCTGGCCATCCGGCAACTGGACCTGATGCTGCTCAGCCATGCCGATAACGATCACGCCGGAGGTGCC
CTGGCGGTGCAGCGGGCGTTGCCGGTGCACCTGGTACGCAGTGGCGAGCCCCGGGAGTTGCCGGCGGCCCTGCAAGCCAC
ACCTTGTGAGTCCGGAGTGAGCTGGCAATGGGATGGCGTGCGTTTCAGCCAATGGCAATGGGCCCACGCCCGTGATGGCA
ACCAGGCATCCTGCGTGCTGTTGGTCGAGGCGAATGGAGAGCGCCTGCTGCTCACCGGCGATATCGACGTCCAGGCCGAA
AGAGCCTTTCTAGACAGTCCGCTGGGGGTGCCTGTGCATTGGCTGCAAGCGCCTCACCACGGTAGCCGGACCTCGTCGTC
CAGGGCCTTGTTGCAGCGCCTGGCCCCTGGCGCGGTGCTGATCTCCCGGGGGCGTGGCAATGCCTATGGCCATCCCCACC
CGCAAGTGGTGGCGCGTTATCGACGCCAGGGCGTGATCATCTACGACAGCGCCGAGCAGGGGGCACTGAAGCTGCAACTG
GGGGCCTTCAGCAAGCCATACAGCGTGCGGGAGCAGCGGCGTTTCTGGCGTGCTCCACCGGCAATGCCTTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)

Domain of unknown function (DUF4131) (DUF4131)

(19-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.674

96.635

0.606
  comA Ralstonia pseudosolanacearum GMI1000

32.968

100

0.365