Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   I9018_RS09070 Genome accession   NZ_CP066123
Coordinates   1948030..1948665 (+) Length   211 a.a.
NCBI ID   WP_068577997.1    Uniprot ID   A0A6G6ZX09
Organism   Pseudomonas sp. MPFS     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1943030..1953665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9018_RS09050 (I9018_09055) - 1943279..1944211 (+) 933 WP_241109231.1 ABC transporter ATP-binding protein -
  I9018_RS09055 (I9018_09060) - 1944208..1944987 (+) 780 WP_068578002.1 ABC transporter permease -
  I9018_RS09060 (I9018_09065) - 1945040..1945555 (-) 516 WP_124346166.1 DUF2062 domain-containing protein -
  I9018_RS09065 (I9018_09070) comA 1945696..1947927 (+) 2232 WP_241109232.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  I9018_RS09070 (I9018_09075) exbB 1948030..1948665 (+) 636 WP_068577997.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  I9018_RS09075 (I9018_09080) - 1948662..1949090 (+) 429 WP_068577995.1 biopolymer transporter ExbD -
  I9018_RS09080 (I9018_09085) lpxK 1949090..1950100 (+) 1011 WP_241109233.1 tetraacyldisaccharide 4'-kinase -
  I9018_RS09085 (I9018_09090) - 1950125..1950310 (+) 186 WP_056836870.1 Trm112 family protein -
  I9018_RS09090 (I9018_09095) kdsB 1950307..1951071 (+) 765 WP_068577991.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  I9018_RS09095 (I9018_09100) - 1951071..1951535 (+) 465 WP_068577989.1 low molecular weight protein-tyrosine-phosphatase -
  I9018_RS09100 (I9018_09105) murB 1951532..1952551 (+) 1020 WP_241109234.1 UDP-N-acetylmuramate dehydrogenase -
  I9018_RS09105 (I9018_09110) - 1952800..1953270 (+) 471 WP_068577985.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23063.20 Da        Isoelectric Point: 6.9829

>NTDB_id=517544 I9018_RS09070 WP_068577997.1 1948030..1948665(+) (exbB) [Pseudomonas sp. MPFS]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAHVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=517544 I9018_RS09070 WP_068577997.1 1948030..1948665(+) (exbB) [Pseudomonas sp. MPFS]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCTGCCGTGGGCATCATTGC
CGAGCGCTTGTGGACCCTGCGAGCCAGCCGTGTCACACCGCCCCATCTGCTGGGCCAGGTCTGGCGCTGGATCAAGGACA
AGCAGCTGAACAAGGACAAGCTCAAGGAGTTGCGCGCCGACTCGCCACTGGGTGAGATCCTGGCCGCAGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCGGCTGCCCGGGTCATCCATGAGCTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCTTTGCTGGGCCTGCTGGGTACGGTGCTGGGGATGATCGATATCTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAACGCCCATGTACTGGCGGGGGGGATTTCCAAGGCGCTGATCACTACGGCA
GCCGGCCTGATGGTGGGTATTCCGTCGGTGTTCTTCCATCGCTTCCTGCAACGCCGGGTCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAGGTGATCCAGGGCGACCGCGATGTCGACCTGGCCGAGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G6ZX09

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.204

100

0.872