Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   I9190_RS12550 Genome accession   NZ_CP066121
Coordinates   2675038..2675748 (+) Length   236 a.a.
NCBI ID   WP_004831157.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain GD0320     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2670038..2680748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9190_RS12535 (I9190_12535) - 2670935..2672884 (+) 1950 WP_151781315.1 family 2A encapsulin nanocompartment cargo protein cysteine desulfurase -
  I9190_RS12540 (I9190_12540) - 2673520..2674284 (+) 765 WP_121775471.1 peptidoglycan DD-metalloendopeptidase family protein -
  I9190_RS12545 (I9190_12545) - 2674464..2674886 (-) 423 WP_151781316.1 OsmC family protein -
  I9190_RS12550 (I9190_12550) crp 2675038..2675748 (+) 711 WP_004831157.1 cAMP-activated global transcriptional regulator CRP Regulator
  I9190_RS12555 (I9190_12555) - 2676070..2677119 (+) 1050 WP_151781317.1 NADP(H)-dependent aldo-keto reductase -
  I9190_RS12560 (I9190_12560) - 2677233..2678018 (-) 786 WP_009583904.1 M48 family metallopeptidase -
  I9190_RS12565 (I9190_12565) - 2678131..2678436 (-) 306 WP_042089576.1 phosphoethanolamine transferase domain-containing protein -
  I9190_RS12570 (I9190_12570) - 2678586..2679377 (-) 792 WP_009583959.1 M48 family metallopeptidase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26639.24 Da        Isoelectric Point: 4.7528

>NTDB_id=517518 I9190_RS12550 WP_004831157.1 2675038..2675748(+) (crp) [Acinetobacter bereziniae strain GD0320]
MSSNFAQLSTDALSPGQLPESVKALLKRAHINRFPKRSTIIDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEQNPQRTAEVRTRDVCEIAEISYDNFHEISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEESKFSEDEYNNDDE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=517518 I9190_RS12550 WP_004831157.1 2675038..2675748(+) (crp) [Acinetobacter bereziniae strain GD0320]
ATGTCTTCTAATTTTGCACAACTTAGTACAGATGCTTTGTCACCTGGTCAATTACCTGAGTCAGTCAAAGCTTTGCTCAA
GAGAGCCCACATCAATCGTTTTCCTAAACGCTCAACAATCATTGATGCAGGTTCAGAGTCAAAATCACTGTATTTAATTT
TAAAAGGTTCAGTTTCAATTATTTTACGCGAAGATGATGAGCGTGAAATCGTTGTTGCCTATTTGAACCCTGGGGATTTT
TTCGGAGAAATGGGTTTATTTGAGCAAAACCCACAACGTACAGCCGAGGTCAGAACTCGTGACGTATGTGAAATCGCAGA
GATTTCATATGACAATTTCCACGAAATCAGTAAACAATACCCTGACTTAAGTTATGCAGTATTTGCGCAACTTGTTCGTC
GCTTAAAGAATACAACACGTAAAGTGACTGACCTTGCATTTATTGATGTATCTGGACGTATTGCACGTTGCTTGATTGAT
CTTTCTGCGCAACCTGAAGCGATGATTTTACCAAATGGTCGTCAGATTCGTATTACTCGTCAAGAAATTGGTCGCATCGT
AGGTTGCTCACGTGAAATGGTAGGGCGTGTATTAAAAACGCTTGAAGAGCAAGGTATGATCGAGACTGATGGTAAAGCAA
TTTTAATTTTTGATGCGTCTTTAGAAGAGTCTAAATTCTCTGAAGATGAATATAACAATGATGATGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

89.787

99.576

0.894
  crp Vibrio cholerae strain A1552

48.058

87.288

0.419
  crp Haemophilus influenzae Rd KW20

48.718

82.627

0.403