Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I9190_RS09275 Genome accession   NZ_CP066121
Coordinates   2018944..2019987 (-) Length   347 a.a.
NCBI ID   WP_004830485.1    Uniprot ID   A0A0A8TSR1
Organism   Acinetobacter bereziniae strain GD0320     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2013944..2024987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9190_RS09250 (I9190_09250) - 2014204..2015316 (+) 1113 WP_046760789.1 OmpW/AlkL family protein -
  I9190_RS09260 (I9190_09260) - 2015781..2016395 (-) 615 WP_121775208.1 regulatory protein RecX -
  I9190_RS09265 (I9190_09265) - 2016516..2017946 (-) 1431 WP_046760787.1 class I adenylate-forming enzyme family protein -
  I9190_RS09270 (I9190_09270) - 2017948..2018796 (-) 849 WP_046760786.1 SDR family NAD(P)-dependent oxidoreductase -
  I9190_RS09275 (I9190_09275) recA 2018944..2019987 (-) 1044 WP_004830485.1 recombinase RecA Machinery gene
  I9190_RS09280 (I9190_09280) - 2020147..2020587 (-) 441 WP_004830486.1 RNA-binding S4 domain-containing protein -
  I9190_RS09285 (I9190_09285) - 2020571..2021266 (-) 696 WP_151713131.1 HAD-IA family hydrolase -
  I9190_RS09290 (I9190_09290) - 2021895..2022149 (+) 255 WP_004830489.1 hypothetical protein -
  I9190_RS09295 (I9190_09295) - 2022654..2023505 (+) 852 WP_009587018.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  I9190_RS09300 (I9190_09300) - 2023610..2024338 (+) 729 WP_009587013.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37612.13 Da        Isoelectric Point: 5.1520

>NTDB_id=517514 I9190_RS09275 WP_004830485.1 2018944..2019987(-) (recA) [Acinetobacter bereziniae strain GD0320]
MDDNKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFREAIFQIMYGKGVNHLGELVDLAVAQELVQKAGAWYSYQGDKIGQGKNNVIRHLEENPQLAQDLDR
MIREKLLTTANAAPVEEKEEEPDFLDV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=517514 I9190_RS09275 WP_004830485.1 2018944..2019987(-) (recA) [Acinetobacter bereziniae strain GD0320]
ATGGATGATAACAAAAGCAAGGCACTGAACGCGGCACTTAGCCAAATTGAAAAACAATTTGGTAAAAATACAGTCATGCG
TTTAGGGGATAATACTGTACAAGCTGTTGAAGCTGTTTCTACTGGCTCTTTAACACTTGATATTGCACTAGGAATCGGGG
GCTTACCAAAAGGACGTATTGTTGAAATTTATGGTCCTGAATCTTCTGGTAAAACCACAATGACTTTACAGGCAATCGCA
CAATGCCAAAAAGCGGGTGGAACTTGTGCCTTTATTGATGCCGAACACGCTTTAGATCCACAATATGCCCGTAAACTTGG
GGTTGATATTGACAATCTTTTAGTTTCACAGCCAGATAATGGTGAACAGGCACTTGAAATTGCCGATATGCTTGTTCGCT
CAGGTGCTATTGATCTGATCGTTGTCGACTCTGTAGCTGCATTGACTCCTAAAGCTGAAATTGAAGGCGAAATGGGTGAC
TCTCACATGGGCTTACAAGCACGTTTGATGAGCCAAGCATTGCGTAAAATCACTGGTAATGCAAAGCGTTCAAACTGTAT
GGTAATTTTCATTAACCAAATCCGTATGAAAATTGGTGTTATGTTTGGTAGCCCTGAGACCACAACTGGTGGTAATGCAT
TGAAGTTCTATGCTTCAGTACGTTTAGATATTCGTCGCATTGGTCAAGTCAAAGAAGGCGATGAGATCGTTGGTTCTGAA
ACCAAAGTGAAAGTTGTTAAAAATAAAATGGCTCCTCCTTTCCGTGAAGCGATTTTCCAAATCATGTATGGTAAAGGTGT
TAATCACTTGGGTGAGTTGGTTGATCTTGCCGTTGCTCAAGAACTGGTTCAAAAAGCAGGTGCATGGTATTCCTACCAAG
GCGATAAAATCGGTCAAGGTAAAAACAATGTCATTCGCCATTTAGAAGAAAATCCTCAACTGGCGCAAGATCTTGATCGT
ATGATTCGTGAAAAGCTCTTAACTACAGCAAATGCTGCACCTGTTGAAGAGAAAGAAGAAGAACCTGACTTTTTAGATGT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8TSR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

91.379

100

0.916
  recA Acinetobacter baumannii D1279779

91.04

99.712

0.908
  recA Pseudomonas stutzeri DSM 10701

73.775

100

0.738
  recA Vibrio cholerae strain A1552

72.012

98.847

0.712
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.012

98.847

0.712
  recA Glaesserella parasuis strain SC1401

71.818

95.101

0.683
  recA Ralstonia pseudosolanacearum GMI1000

70.427

94.524

0.666
  recA Neisseria gonorrhoeae MS11

68.21

93.372

0.637
  recA Neisseria gonorrhoeae MS11

68.21

93.372

0.637
  recA Neisseria gonorrhoeae strain FA1090

68.21

93.372

0.637
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

95.389

0.614
  recA Helicobacter pylori strain NCTC11637

61.652

97.695

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

94.236

0.602
  recA Helicobacter pylori 26695

61.357

97.695

0.599
  recA Streptococcus pyogenes NZ131

61.585

94.524

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.813

92.219

0.579
  recA Streptococcus mitis SK321

58.944

98.271

0.579
  recA Streptococcus pneumoniae D39

61.35

93.948

0.576
  recA Streptococcus pneumoniae Rx1

61.35

93.948

0.576
  recA Streptococcus pneumoniae R6

61.35

93.948

0.576
  recA Streptococcus pneumoniae TIGR4

61.35

93.948

0.576
  recA Streptococcus mutans UA159

61.538

93.66

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

92.507

0.573
  recA Streptococcus mitis NCTC 12261

61.3

93.084

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

56.677

97.118

0.55
  recA Lactococcus lactis subsp. cremoris KW2

58.514

93.084

0.545