Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   I9190_RS01780 Genome accession   NZ_CP066121
Coordinates   389236..390651 (-) Length   471 a.a.
NCBI ID   WP_005035339.1    Uniprot ID   A0A0A8TL64
Organism   Acinetobacter bereziniae strain GD0320     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 384236..395651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9190_RS01765 (I9190_01765) lptG 385153..386223 (+) 1071 WP_004826310.1 LPS export ABC transporter permease LptG -
  I9190_RS01770 (I9190_01770) gpmI 386390..387937 (+) 1548 WP_121774267.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  I9190_RS01775 (I9190_01775) - 387966..389138 (+) 1173 WP_042088582.1 S41 family peptidase -
  I9190_RS01780 (I9190_01780) pilR 389236..390651 (-) 1416 WP_005035339.1 sigma-54-dependent transcriptional regulator Regulator
  I9190_RS01785 (I9190_01785) pilS 390669..392237 (-) 1569 WP_004826317.1 sensor histidine kinase Regulator
  I9190_RS01790 (I9190_01790) - 392274..392909 (-) 636 WP_004718392.1 response regulator -
  I9190_RS01795 (I9190_01795) pbpG 393142..394194 (+) 1053 WP_004826319.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  I9190_RS01800 (I9190_01800) - 394364..394978 (+) 615 WP_004826322.1 DUF6915 family protein -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 53063.08 Da        Isoelectric Point: 6.7083

>NTDB_id=517504 I9190_RS01780 WP_005035339.1 389236..390651(-) (pilR) [Acinetobacter bereziniae strain GD0320]
MTTRQPLVLLVDDEQDLCMLMQMSLSRMGIKTHMAHHLQQAKYFFSEYKYDACITDLNLPDGSGLDLVKHVSQHYPKTPI
AVLTAYGNMEIAIASLKAGAFDFVSKPINQLHLQQLLQKALHVPQLSETVTKAPLEESMLIGDSQIIRKLRESIKKIARS
QAPVFITGESGTGKEVVANLIHLLSNRSDSPFIAINCGAISEELMESELFGHKKGCFSGATQDKQGLVQAANGGTLFLDE
VAELSLAMQAKLLRAVQEKKIRPLGSDTEIEVDFRIISATHQNIEALVEQGKFRHDLFFRIHVMDITLPPLRDRERDILI
LANHFIQQICTEWRIPSKSFTDAAKAFLLQQHYSGNVRELRNIIEKAITMCDEDSIDIQQLQPAPQRSSINKIESFESVP
TNHTAIELPNKAPNIPKEGLEQYLENVEKEVLLSALNQTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTDDE

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=517504 I9190_RS01780 WP_005035339.1 389236..390651(-) (pilR) [Acinetobacter bereziniae strain GD0320]
ATGACTACACGACAACCATTGGTGTTACTTGTAGATGATGAACAAGATTTATGTATGTTGATGCAAATGAGCCTATCGCG
AATGGGCATCAAAACACATATGGCACATCATTTACAGCAAGCCAAATATTTTTTTAGTGAATATAAATATGATGCCTGTA
TTACAGATTTAAACTTGCCTGATGGGAGTGGTTTAGATTTAGTCAAACATGTATCGCAACATTATCCAAAAACGCCAATC
GCTGTACTCACAGCATATGGCAATATGGAAATCGCAATTGCATCACTTAAAGCTGGGGCTTTTGATTTCGTTAGCAAACC
AATCAATCAACTACATTTACAGCAACTTTTACAAAAAGCTTTACATGTTCCTCAGTTGAGTGAAACTGTAACTAAAGCCC
CACTTGAAGAGTCTATGCTCATTGGCGACTCGCAAATCATTCGTAAATTAAGAGAATCGATTAAAAAAATTGCCCGTTCA
CAAGCACCTGTTTTTATTACAGGGGAGTCTGGTACAGGGAAAGAAGTGGTTGCGAATCTTATTCATTTACTCAGTAACCG
CAGTGATAGTCCATTTATTGCAATCAACTGCGGGGCTATCTCTGAAGAACTGATGGAAAGTGAGCTTTTCGGACATAAGA
AAGGCTGTTTCTCTGGCGCAACGCAAGATAAACAAGGCTTGGTTCAGGCTGCCAATGGTGGCACATTGTTCTTGGATGAA
GTCGCAGAACTGTCTTTAGCCATGCAAGCTAAACTTTTACGTGCTGTTCAGGAAAAGAAAATCCGTCCTTTGGGTAGCGA
CACTGAAATAGAAGTTGATTTTCGAATCATCAGTGCAACGCATCAAAATATCGAAGCTCTGGTTGAACAAGGGAAGTTCC
GCCATGATTTGTTTTTTAGAATCCATGTCATGGATATTACACTCCCGCCATTACGTGATCGCGAACGTGACATCTTGATT
TTAGCCAATCATTTTATTCAACAAATTTGTACTGAATGGCGAATTCCGAGCAAATCATTCACAGATGCAGCAAAAGCATT
TCTTTTACAGCAACATTATTCTGGTAATGTTCGTGAACTGCGCAATATTATTGAAAAAGCCATCACGATGTGTGATGAGG
ATTCTATCGATATTCAGCAACTCCAACCTGCGCCACAACGGAGCAGTATTAACAAAATTGAATCCTTTGAGTCTGTTCCG
ACCAACCATACGGCGATTGAACTTCCAAACAAAGCACCGAATATTCCGAAAGAAGGCTTGGAGCAATATTTGGAAAATGT
TGAAAAAGAAGTCTTGTTATCTGCATTAAATCAAACCCATTGGAATCGGACCTTAGCTGCGAAAAAACTCGGCATGACCT
TTCGATCTTTACGTTATCGTTTGAAAAAGTTTGGGCTAGATACTGATGATGAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8TL64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

69.915

100

0.701
  pilR Pseudomonas aeruginosa PAK

47.186

98.089

0.463