Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   I6I02_RS08290 Genome accession   NZ_CP066093
Coordinates   1828037..1828480 (-) Length   147 a.a.
NCBI ID   WP_070576561.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1823037..1833480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS08275 (I6I02_08275) - 1823720..1824343 (-) 624 WP_198463444.1 GNAT family N-acetyltransferase -
  I6I02_RS08280 (I6I02_08280) rcrQ 1824451..1826229 (-) 1779 WP_198463445.1 ABC transporter ATP-binding protein Regulator
  I6I02_RS08285 (I6I02_08285) rcrP 1826219..1828033 (-) 1815 WP_198463446.1 ABC transporter ATP-binding protein Regulator
  I6I02_RS08290 (I6I02_08290) rcrR 1828037..1828480 (-) 444 WP_070576561.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  I6I02_RS08295 (I6I02_08295) - 1828669..1829079 (-) 411 WP_070576564.1 peptide deformylase -
  I6I02_RS08300 (I6I02_08300) - 1829237..1830778 (-) 1542 WP_232621263.1 YfhO family protein -
  I6I02_RS08305 (I6I02_08305) gdhA 1831064..1832416 (-) 1353 WP_002885547.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17104.55 Da        Isoelectric Point: 9.5657

>NTDB_id=517376 I6I02_RS08290 WP_070576561.1 1828037..1828480(-) (rcrR) [Streptococcus salivarius strain FDAARGOS_1045]
MHGKDPFNEIKKFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKRLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHEQLLEGISKEDAETAFRVFHQIHKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=517376 I6I02_RS08290 WP_070576561.1 1828037..1828480(-) (rcrR) [Streptococcus salivarius strain FDAARGOS_1045]
ATGCATGGAAAAGATCCTTTTAATGAAATCAAAAAATTCATCAATACCATGGAATCTAGAGTGCAAGAGCTAGGCAAAGC
TTACGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTCAGGTACTTGTTTGAGAACCAAGATAAAGAAATCTTTA
TCAAAGATATCGAGAAAAGGCTATCTATATCTAAATCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAACGGTTTC
GTTGAATTGGTGACATCGGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTGGGTAAAAAGAAGGCCCAAGA
TGTTGGACATTTCCGAGAGGCTATCCATGAACAGTTATTAGAAGGCATTTCGAAAGAGGATGCTGAAACAGCTTTTCGGG
TCTTTCACCAAATTCATAAGAATTTAGAAAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.738

95.918

0.544