Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   I6I02_RS08285 Genome accession   NZ_CP066093
Coordinates   1826219..1828033 (-) Length   604 a.a.
NCBI ID   WP_198463446.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1821219..1833033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS08265 (I6I02_08265) - 1822268..1822945 (-) 678 WP_198463443.1 response regulator transcription factor -
  I6I02_RS08270 (I6I02_08270) - 1822947..1823570 (-) 624 WP_037601877.1 GTP pyrophosphokinase family protein -
  I6I02_RS08275 (I6I02_08275) - 1823720..1824343 (-) 624 WP_198463444.1 GNAT family N-acetyltransferase -
  I6I02_RS08280 (I6I02_08280) rcrQ 1824451..1826229 (-) 1779 WP_198463445.1 ABC transporter ATP-binding protein Regulator
  I6I02_RS08285 (I6I02_08285) rcrP 1826219..1828033 (-) 1815 WP_198463446.1 ABC transporter ATP-binding protein Regulator
  I6I02_RS08290 (I6I02_08290) rcrR 1828037..1828480 (-) 444 WP_070576561.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  I6I02_RS08295 (I6I02_08295) - 1828669..1829079 (-) 411 WP_070576564.1 peptide deformylase -
  I6I02_RS08300 (I6I02_08300) - 1829237..1830778 (-) 1542 WP_232621263.1 YfhO family protein -
  I6I02_RS08305 (I6I02_08305) gdhA 1831064..1832416 (-) 1353 WP_002885547.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 66984.59 Da        Isoelectric Point: 6.3311

>NTDB_id=517375 I6I02_RS08285 WP_198463446.1 1826219..1828033(-) (rcrP) [Streptococcus salivarius strain FDAARGOS_1045]
MFKIFKRLTTKELSMIILAVIFVCLNVYLNLKIPDYMSDITTLLSTKGTKASDIFAWNTDAPGMRMLLMSFAGFMASVVV
GFLAARTAASFTTRLRDDIFHQVLGFSDAEIKQFSIPSLLTRTTNDITQLQMVLTMGLQVITQGPIMAIWAITKIADKNG
NWLLALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSFALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTNPTKIAGAMEDKVHLFSDMVVYSSYAMQVVMGFMMMIVVFFLLP
RAVVAAGRINEVLDTQSSVSYPENSSEKPKDVGTVEFDDVSFRYSETSEPVLEHVSFKAKKGDTVAFIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRHFDHETLHNIVGYIPQKAVLFSGNITSNMTMGTSNNSPLDDAKIWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRKLRQELSEKTQDMTKLIVAQRISTIMDA
DQILVLDQGKVVGQGTHRELLANNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=517375 I6I02_RS08285 WP_198463446.1 1826219..1828033(-) (rcrP) [Streptococcus salivarius strain FDAARGOS_1045]
ATGTTTAAAATTTTTAAACGTTTGACGACAAAAGAGTTAAGCATGATTATCTTAGCTGTGATATTTGTTTGTTTGAACGT
CTATCTAAACTTGAAAATTCCAGACTATATGTCTGATATTACGACACTCTTATCAACTAAGGGAACTAAGGCGTCGGATA
TTTTTGCCTGGAATACAGATGCCCCAGGGATGCGAATGCTTTTAATGTCATTTGCAGGCTTTATGGCCTCTGTAGTGGTT
GGTTTCTTAGCTGCTAGAACAGCGGCAAGTTTTACCACCCGTCTTCGTGATGATATCTTCCATCAGGTTCTAGGTTTTTC
GGATGCAGAGATTAAGCAATTCTCAATTCCTAGTCTTTTGACCCGTACGACAAATGATATTACCCAATTGCAGATGGTAC
TTACCATGGGATTGCAGGTCATTACACAGGGGCCTATCATGGCCATTTGGGCGATTACAAAGATTGCCGATAAAAATGGA
AATTGGCTCCTTGCCTTGCTTGTCGCTGTGGCAGTGATTGCCATTCTCATGCTCTTCCTCTTGATTATGGTTATGCCTAA
GCAACGCTTGATTCAAACTCTGACCGATAAACTGAACAGCGTAACGCGTGAATCTCTTACAGGAATTCGTGTGGTGCGTG
CCTATAACGCTGAAAGTTATCAAGAGGATAAATTTGAAAAGGCCAATACTGATTTGACCCAAAACAACCTCTTTATCGGT
CGTTCTTTTGCTTTACTGACACCGGTAATGACTGCTGTATCCAGCGGTTTGACACTGGCTATTTATTGGATTGGTGCGCA
TCTGATTGAAGATGTTAAGATTCCAACTAATCCAACGAAAATTGCTGGTGCCATGGAAGACAAGGTCCATCTCTTCTCAG
ATATGGTGGTTTATTCGTCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATGATTGTCGTTTTCTTCCTTCTTCCA
CGTGCCGTTGTAGCAGCTGGCCGTATCAATGAAGTTCTAGATACCCAATCTTCAGTCTCTTACCCTGAAAATAGTTCTGA
AAAACCTAAAGACGTGGGCACTGTCGAATTCGATGATGTTTCTTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAGGGTGACACGGTTGCCTTTATTGGTTCGACTGGATCTGGTAAATCAACGCTTGTCAAC
CTTATCCCACGATTTTATGATGCCACGCAAGGAACTATCAAGGTTGACGGTGTGGATGTACGACATTTTGACCACGAAAC
CTTGCACAATATAGTCGGTTATATTCCACAAAAGGCTGTGCTTTTCTCAGGTAATATCACGTCAAATATGACAATGGGAA
CGAGCAATAATAGTCCTCTAGATGACGCTAAGATTTGGGAAGCTCTCGAATTGGCTCAAGGAAAAGACTTTGTTGAAAAT
AAAGAAGGTCAACTTAAGGCAGAGGTTGCTCAAGCTGGGTCTAACTTCTCAGGTGGCCAGAAGCAACGTTTGGCTATTGC
GCGTGCACTTGCCCGTAAGCCTGAAATCTTGATTTTTGACGATTCCTTCTCAGCTTTGGACTATAAGACCGATCGTAAAC
TGCGTCAAGAATTGTCTGAAAAAACACAAGATATGACCAAGTTGATTGTTGCTCAACGTATCTCTACTATTATGGATGCT
GATCAAATCTTGGTACTTGATCAAGGTAAGGTTGTTGGGCAAGGAACCCACAGGGAACTCTTGGCTAACAATGAGGTTTA
CCAAGAAATTGCTTATTCACAATTGTCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(372-522)

ABC transporter transmembrane region (ABC_membrane)

(16-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

67.603

100

0.677