Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   I6I02_RS08280 Genome accession   NZ_CP066093
Coordinates   1824451..1826229 (-) Length   592 a.a.
NCBI ID   WP_198463445.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1819451..1831229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS08250 (I6I02_08250) frr 1819485..1820042 (-) 558 WP_002885567.1 ribosome recycling factor -
  I6I02_RS08255 (I6I02_08255) pyrH 1820057..1820794 (-) 738 WP_002885551.1 UMP kinase -
  I6I02_RS08260 (I6I02_08260) - 1821031..1822254 (-) 1224 WP_198463442.1 sensor histidine kinase -
  I6I02_RS08265 (I6I02_08265) - 1822268..1822945 (-) 678 WP_198463443.1 response regulator transcription factor -
  I6I02_RS08270 (I6I02_08270) - 1822947..1823570 (-) 624 WP_037601877.1 GTP pyrophosphokinase family protein -
  I6I02_RS08275 (I6I02_08275) - 1823720..1824343 (-) 624 WP_198463444.1 GNAT family N-acetyltransferase -
  I6I02_RS08280 (I6I02_08280) rcrQ 1824451..1826229 (-) 1779 WP_198463445.1 ABC transporter ATP-binding protein Regulator
  I6I02_RS08285 (I6I02_08285) rcrP 1826219..1828033 (-) 1815 WP_198463446.1 ABC transporter ATP-binding protein Regulator
  I6I02_RS08290 (I6I02_08290) rcrR 1828037..1828480 (-) 444 WP_070576561.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  I6I02_RS08295 (I6I02_08295) - 1828669..1829079 (-) 411 WP_070576564.1 peptide deformylase -
  I6I02_RS08300 (I6I02_08300) - 1829237..1830778 (-) 1542 WP_232621263.1 YfhO family protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65037.01 Da        Isoelectric Point: 5.0229

>NTDB_id=517374 I6I02_RS08280 WP_198463445.1 1824451..1826229(-) (rcrQ) [Streptococcus salivarius strain FDAARGOS_1045]
MENKPKTSSYKRLKPYIKGFPIPFVLAIVGAIISAVITVIGPDKLKEITNTITEGITPTKMGTIPGIDLDKVASIAMTLA
VLYAISAIVGYLQSFTVATVTQRFSQRFRTAIQKKINSVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNAAQESSQAFKG
LNDKLYKSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAVKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGRIFEFLEEKDMDDESAKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDQGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISEEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAADGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=517374 I6I02_RS08280 WP_198463445.1 1824451..1826229(-) (rcrQ) [Streptococcus salivarius strain FDAARGOS_1045]
ATGGAAAATAAGCCAAAAACATCGTCCTATAAACGCTTAAAACCCTATATTAAAGGTTTCCCAATTCCCTTTGTCCTTGC
GATTGTTGGAGCAATTATTTCAGCAGTCATTACAGTTATTGGACCAGATAAGCTTAAAGAAATTACCAATACTATTACTG
AAGGGATTACACCTACCAAAATGGGGACGATTCCAGGTATTGATTTGGATAAGGTGGCAAGTATTGCTATGACCTTGGCT
GTTCTCTATGCCATTTCAGCGATTGTGGGTTACTTACAAAGCTTTACGGTTGCGACGGTTACACAACGCTTTTCACAACG
TTTCCGTACAGCTATCCAAAAGAAAATCAACAGTGTCCCTCTTAATTATTTCGACAGTCATTCTCAAGGGGACACCCTCT
CTCGTGTGACCAATGACGTTGACCTTTTGGGACAATCGCTTAGCCAAGGCTTAGGTACCTTGATTACTTCAAGTGTTCTC
TTGGTGGCAGCCATTATTATGATGTTCTACTCAAATGTCACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGGTT
TGTTCTAGTAGCCTTCATCATGGGCTTCTCACAACCCCTTTTCAAACGCCAACAAGAAAATTTGGCTAATATTAATGGTT
ATATTGAAGAAATCTACACAGGTCAAGCAGTTGTAACGAGTTACAATGCCGCTCAAGAAAGCAGTCAAGCTTTCAAGGGG
CTTAATGATAAACTCTATAAATCGATGTGGCAATCACAATTTATCTCAGGTATTATGATGCCACTCATGATTTTCATTGG
AAACTTTGGTTACGTCATGGTCTGCTTGGTAGGTGCGGTTAAGGTAATCGACGGTAGCTTGACTATCGGTGATGTGGTAG
CCTTTATGACCTATGTTCGCATCTTCTCACAACCTCTTTCTCAAATTGCACAAGGGATTACACAACTCCAATCAGCAACT
GCAGCCATTGGTCGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGCTAAGACAGCTGAATTGACAGA
TACTAAAGGTCAAGTTGTCTTTGATCATGTTTCCTTTGGTTATACTCCTGAAAAGACTATTATTCATGATTTTTCAGCTC
TTGCTAAGCCAGGTCAAAAGATTGCGATTGTTGGTCCGACAGGTGCTGGTAAGACGACTATTGTTAACCTGCTTATGAAG
TTCTATAACATCGACCAAGGTCGTATCACCATTGACGGTGTGGATACGAACGACATGAAGCGTGAGACTGTTCATGACCA
ATTTTCTATGGTGCTTCAGGACACTTGGCTCTTTGAAGGTACTATTCGTGATAATTTGATTTACAACCAAGAAAATATCT
CTGAAGAGCAAGTTATTGCTGCAGCCAAGGCTGTCGGTGTTCACCACTTTATCACCACACTTCCAAAAGGTTATGACACT
TATTTGGATGACTCTGTGACATTATCAGTTGGTCAGAAACAGCTCTTGACCATTGCACGTGCCCTTCTGAAGGATGCCCC
TCTTCTTATCTTGGATGAAGCGACATCATCTGTTGACACCAGAACAGAAGAATTGATTCAAAAAGCCATGGACAAACTTA
TGGAAGGTCGGACTTCCTTTGTCATTGCTCACCGCTTATCAACCATTCGAAATGCTGATCTTATCCTTGTGATGAAAGAT
GGGAATATTATTGAACAAGGAAATCATGATGAGCTCATGGCAGCAGATGGTTTCTATGCTGATCTTTATAATAGTCAATT
TACAGAAGAAGTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.919

100

0.689