Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   I6I02_RS01440 Genome accession   NZ_CP066093
Coordinates   285952..286986 (+) Length   344 a.a.
NCBI ID   WP_410532096.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 280952..291986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS01405 (I6I02_01405) - 281643..282320 (-) 678 WP_002890056.1 helix-turn-helix domain-containing protein -
  I6I02_RS11070 - 282765..282890 (+) 126 WP_002884447.1 hypothetical protein -
  I6I02_RS01410 (I6I02_01410) - 282908..283516 (+) 609 WP_002884297.1 DUF4230 domain-containing protein -
  I6I02_RS01415 (I6I02_01415) - 283680..284075 (+) 396 WP_198463664.1 hypothetical protein -
  I6I02_RS01420 (I6I02_01420) - 284093..284260 (+) 168 WP_162837453.1 hypothetical protein -
  I6I02_RS01425 (I6I02_01425) - 284441..284740 (-) 300 WP_195435440.1 hypothetical protein -
  I6I02_RS01430 (I6I02_01430) - 284737..285156 (-) 420 WP_037599159.1 HIT family protein -
  I6I02_RS01435 (I6I02_01435) pptA 285221..285952 (+) 732 WP_198463665.1 ABC transporter ATP-binding protein Regulator
  I6I02_RS01440 (I6I02_01440) pptB 285952..286986 (+) 1035 WP_410532096.1 ABC transporter permease Regulator
  I6I02_RS01445 (I6I02_01445) ccrZ 287044..287835 (+) 792 WP_002884270.1 cell cycle regulator CcrZ -
  I6I02_RS01450 (I6I02_01450) trmB 287845..288486 (+) 642 WP_037599162.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  I6I02_RS01460 (I6I02_01460) - 288741..289922 (-) 1182 WP_037599163.1 NAD(P)/FAD-dependent oxidoreductase -
  I6I02_RS01465 (I6I02_01465) ilvD 290035..291753 (+) 1719 WP_198017473.1 dihydroxy-acid dehydratase -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 39819.26 Da        Isoelectric Point: 10.5384

>NTDB_id=517341 I6I02_RS01440 WP_410532096.1 285952..286986(+) (pptB) [Streptococcus salivarius strain FDAARGOS_1045]
MAKLFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLKHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHVKKATGRAFRFWVIVQTLIFILVIPLFLALGLPVWGVILVAVAMAILKYVIFQKKAQPFYKQSG
LNWTEAIAGENKRQQSILKFFSLFTNVKGITSSVKRRAYLDGILKRTKKDKENTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKHLITQIVLVLTLVQAICLFDLKFS
LILVGIMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=517341 I6I02_RS01440 WP_410532096.1 285952..286986(+) (pptB) [Streptococcus salivarius strain FDAARGOS_1045]
ATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGCCGCTACGTCTTTAATGATCA
CTTTATCTTGGTTCTTCTCTTTCTGCTAGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTGAAGCATTTTCCAAAAAATC
CGTGGGCAATCATTCTTGGCCTGCTTGTGCTTTGTCTGTTATTACCTTTCTGGGGGAATATTGCGACTTATCTAGAACCT
GCGGACAAGCACTACCTTTTGGTTAAGGAAGAAGAGGTGCTAGACCATGTTAAGAAGGCAACGGGGCGTGCTTTTAGATT
TTGGGTAATCGTACAAACCCTGATTTTTATTTTGGTTATTCCTCTCTTTTTAGCCTTGGGACTTCCAGTTTGGGGAGTTA
TCCTTGTAGCTGTGGCTATGGCTATTCTTAAGTATGTTATTTTCCAGAAAAAGGCTCAACCTTTTTATAAGCAGTCTGGA
CTGAATTGGACTGAAGCTATTGCAGGAGAAAATAAGCGTCAACAATCGATCTTGAAGTTCTTTTCACTCTTTACCAATGT
TAAAGGGATTACGTCGAGTGTTAAACGTCGTGCCTATTTGGATGGTATTCTCAAACGTACAAAGAAAGACAAGGAAAATA
CCTGGTATAATCTTTACCTAAGAGCCTTCTTGCGTTCTGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCCCTAACG
CTTTTAGTTATCTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTGCTTGTGGTTGTTTTTGACTACCTCTTGCTCTTCCA
GCTCACAGCGCTAAAATCACACTTTGCTTATCAGAGAATGGCTAACCTTATGCCAGTTGGAAAAGACATGCAGGTGAGCA
ATCTTAAGCACTTGATTACTCAGATTGTACTTGTGCTGACTCTGGTCCAGGCTATTTGCCTCTTCGATCTTAAGTTTAGC
CTGATTTTGGTTGGAATTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

98.547

100

0.985

  pptB Streptococcus thermophilus LMD-9

92.442

100

0.924