Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I02_RS00670 Genome accession   NZ_CP066093
Coordinates   132772..133290 (+) Length   172 a.a.
NCBI ID   WP_002891844.1    Uniprot ID   A0AB33ZBY1
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 127772..138290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS00655 (I6I02_00655) mutY 128984..130135 (-) 1152 WP_198463616.1 A/G-specific adenine glycosylase -
  I6I02_RS00660 (I6I02_00660) - 131583..132266 (-) 684 WP_232621269.1 hypothetical protein -
  I6I02_RS00665 (I6I02_00665) rpsF 132470..132760 (+) 291 WP_003093185.1 30S ribosomal protein S6 -
  I6I02_RS00670 (I6I02_00670) ssb 132772..133290 (+) 519 WP_002891844.1 single-stranded DNA-binding protein Machinery gene
  I6I02_RS00675 (I6I02_00675) rpsR 133332..133571 (+) 240 WP_000068665.1 30S ribosomal protein S18 -
  I6I02_RS00680 (I6I02_00680) - 133703..134584 (-) 882 WP_198463617.1 DUF4300 family protein -
  I6I02_RS00685 (I6I02_00685) - 134701..135372 (-) 672 WP_048790099.1 DUF1129 domain-containing protein -
  I6I02_RS00690 (I6I02_00690) - 135441..136385 (-) 945 WP_060972417.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18594.32 Da        Isoelectric Point: 4.9163

>NTDB_id=517336 I6I02_RS00670 WP_002891844.1 132772..133290(+) (ssb) [Streptococcus salivarius strain FDAARGOS_1045]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=517336 I6I02_RS00670 WP_002891844.1 132772..133290(+) (ssb) [Streptococcus salivarius strain FDAARGOS_1045]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAACGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAACCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACAGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAGAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36