Detailed information NTG0517311

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6H43_RS12775
• Genome accession: NZ_CP066092
• Coordinates: 2730417..2731289 (-)
• Length: 290 a.a.
• NCBI ID: WP_042033195.1
• Uniprot ID: -
• Organism: Aeromonas jandaei strain FDAARGOS_986
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2725417..2736289

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6H43_RS12750 (I6H43_12750)	secA	2725548..2728268 (+)	2721	WP_042033186.1	preprotein translocase subunit SecA	-
I6H43_RS12755 (I6H43_12755)	mutT	2728343..2728747 (+)	405	WP_042033189.1	8-oxo-dGTP diphosphatase MutT	-
I6H43_RS12760 (I6H43_12760)	yacG	2728820..2729014 (-)	195	WP_005336142.1	DNA gyrase inhibitor YacG	-
I6H43_RS12765 (I6H43_12765)	zapD	2729024..2729746 (-)	723	WP_042033191.1	cell division protein ZapD	-
I6H43_RS12770 (I6H43_12770)	coaE	2729791..2730399 (-)	609	WP_042033194.1	dephospho-CoA kinase	-
I6H43_RS12775 (I6H43_12775)	pilD	2730417..2731289 (-)	873	WP_042033195.1	A24 family peptidase	Machinery gene
I6H43_RS12780 (I6H43_12780)	pilC	2731312..2732553 (-)	1242	WP_042033196.1	type II secretion system F family protein	Machinery gene
I6H43_RS12785 (I6H43_12785)	pilB	2732699..2734405 (-)	1707	WP_033115377.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
I6H43_RS21440 (I6H43_12790)	-	2734409..2734837 (-)	429	WP_042033198.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
I6H43_RS12795 (I6H43_12795)	nadC	2735160..2736017 (-)	858	WP_042033200.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32242.57 Da
• Isoelectric Point: 6.4813

>NTDB_id=517311 I6H43_RS12775 WP_042033195.1 2730417..2731289(-) (pilD) [Aeromonas jandaei strain FDAARGOS_986]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRGYFTPDEEQLTEPRYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCGECQAPISARYPLVELLTALLSVAVAMVISPGWGALVALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLIGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAIIGISLIALRKHHQGNPIPFGPYLAIAGWIALLWGDTITRWYLTTIL

Nucleotide

• Length: 873 bp

>NTDB_id=517311 I6H43_RS12775 WP_042033195.1 2730417..2731289(-) (pilD) [Aeromonas jandaei strain FDAARGOS_986]
ATGTTGTTGATCACTGATGTTTTCCATAGCCTCCCCTGGCTCTACTTCTCGTTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTTCTCAACGTGGTGATCCATCGCTTGCCCATTATGTTGGAACGAGAATGGCAGGCTGAATATAGAGGCTACTTCA
CCCCCGATGAAGAGCAATTAACCGAACCGCGCTACAACCTGATGGTACCGCGCTCGGCCTGCCCCCATTGCGGCCATGCC
ATCACCGCACTGGAAAACATCCCGCTGTTAAGCTGGCTCTGGCTCAAAGGGCGCTGTGGTGAGTGCCAAGCCCCTATTTC
GGCCCGCTATCCGCTGGTTGAACTGCTGACAGCGCTGCTCTCGGTGGCCGTAGCCATGGTGATCTCACCGGGTTGGGGTG
CCCTTGTCGCCCTGCTGCTGACCTGGGTATTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCAGACCAG
CTGACCCTGCCGCTGCTGTGGGGCGGTTTGCTGTTCAACCTGATCGGTGGTTTTGCACCGCTTGCTGATGCTGTGATCGG
CGCCATGGCAGGATATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAACTGCTGACCGGCAAGGAAGGGATGGGGTATG
GCGACTTCAAGTTGCTGGCGGCACTGGGAGCCTGGCTCGGCTGGCAGGCACTGCCGATCATACTGCTGCTCTCATCTTTG
GTTGGTGCCATCATCGGCATCTCGCTCATAGCCCTGCGCAAACACCATCAGGGTAACCCCATCCCCTTTGGCCCCTACCT
CGCCATCGCGGGCTGGATTGCGCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCACCACCATCCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.644	100	0.621
pilD	Vibrio campbellii strain DS40M4	55.749	98.966	0.552
pilD	Acinetobacter baumannii D1279779	53.521	97.931	0.524
pilD	Acinetobacter nosocomialis M2	53.521	97.931	0.524
pilD	Neisseria gonorrhoeae MS11	48.913	95.172	0.466