Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   I6H73_RS01425 Genome accession   NZ_CP066073
Coordinates   277068..278570 (+) Length   500 a.a.
NCBI ID   WP_003057826.1    Uniprot ID   A0AAE9U2R6
Organism   Streptococcus dysgalactiae strain FDAARGOS_1016     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 272068..283570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H73_RS01410 (I6H73_01410) - 272327..273348 (+) 1022 Protein_274 IS30 family transposase -
  I6H73_RS01415 (I6H73_01415) pbp3 273463..274701 (-) 1239 WP_003057819.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  I6H73_RS01420 (I6H73_01420) amiA 275032..277002 (+) 1971 WP_003057820.1 peptide ABC transporter substrate-binding protein Regulator
  I6H73_RS01425 (I6H73_01425) amiC 277068..278570 (+) 1503 WP_003057826.1 ABC transporter permease Regulator
  I6H73_RS01430 (I6H73_01430) amiD 278570..279496 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  I6H73_RS01435 (I6H73_01435) amiE 279505..280575 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  I6H73_RS01440 (I6H73_01440) amiF 280568..281491 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator
  I6H73_RS01445 (I6H73_01445) - 281519..282505 (-) 987 WP_115261915.1 IS30 family transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 55942.32 Da        Isoelectric Point: 10.2619

>NTDB_id=517162 I6H73_RS01425 WP_003057826.1 277068..278570(+) (amiC) [Streptococcus dysgalactiae strain FDAARGOS_1016]
MKKYILNRILRSLVSVVLVTALTYTIVYTLVPVGLIFKQDPNYNKMTTTPDKKAAYESLTFQRMGYINYFSSKELKDNAS
KIDSSVTTEATSANKVIYEKYIHSLGNGWQLKRFPVSKKFYATRKIPIYERVWNFFSNLVVIDHPWKIQDKNNPNLARYV
RLENDKSIGWSLVGSGTQHKYLVYANGKFPYLHQNLVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRTYKNPKSMDDITKANYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVLIAYVIGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGSMVGLPDSFPMLGASSPKSYVLPALILGILSIPSTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRDHLFKNAMVPIVSGIPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIAMTIVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=517162 I6H73_RS01425 WP_003057826.1 277068..278570(+) (amiC) [Streptococcus dysgalactiae strain FDAARGOS_1016]
ATGAAAAAATACATTTTAAACCGTATCTTACGATCGTTAGTATCGGTTGTTCTGGTAACGGCTTTAACATACACCATCGT
ATATACCCTCGTCCCTGTCGGTCTTATCTTTAAACAAGACCCTAACTACAATAAGATGACGACGACACCAGATAAAAAGG
CTGCTTATGAAAGCTTAACCTTCCAACGTATGGGGTATATTAATTACTTTTCAAGTAAAGAATTAAAAGATAATGCTTCT
AAAATAGATAGTAGTGTAACGACTGAAGCGACTAGTGCTAACAAGGTTATTTATGAGAAATATATTCATTCCCTCGGTAA
TGGCTGGCAGCTAAAACGTTTCCCGGTTAGCAAAAAATTCTATGCTACTCGTAAGATTCCTATTTACGAACGTGTTTGGA
ACTTCTTTTCAAACTTAGTTGTTATTGACCATCCTTGGAAAATTCAAGACAAGAATAACCCTAATCTAGCTAGATATGTT
CGCCTTGAAAATGATAAATCTATTGGCTGGTCACTTGTTGGATCGGGGACACAACACAAATACCTTGTTTATGCCAATGG
CAAGTTCCCTTACCTTCACCAAAACCTTGTTACCCTAAACTTAGGAACATCTTATCCAACATACAGCAATATTCCTGTTC
TTCAGGTTATTTCACAAGGACAAGGACGAACAGCTCTTCAAGATGTTACTTTCCCATCAGGAGTGACTAAAAAATCATCA
GTGGATATTTACAGTCGTACTTATAAAAATCCAAAATCAATGGATGATATTACCAAAGCAAACTATGGTAAGGGCGATTC
ATATACTAAGACCATTAATAACTATGTTGACCCATCAATGATTCACAATTCCTTTGTTATTGGGTTCTTTGGTGTCCTAA
TTGCTTATGTTATTGGACTACCTCTCGGTCTATTTATGGCACGCTTTAAAAATACCTATTTTGATCGTTTTTCAACAGCA
ACCATGACCTTCATGCTTGCCTTACCAAGTATTGCCGTTATCTATGTTGTTCGCTTCCTAGGAAGTATGGTTGGCTTGCC
AGATAGTTTTCCTATGCTAGGAGCGTCTAGCCCTAAATCTTACGTATTACCAGCTCTTATTTTGGGAATTTTAAGTATCC
CAAGTACAGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCTAGTGATTGGGTACGGTTTGCTCGCTCAAAAGGG
TTATCAGAATCTGAAATTTATAGAGACCACCTTTTCAAAAATGCTATGGTTCCGATTGTCTCAGGTATTCCGGCAAGTAT
TATTCTTGCAATTGGTGGAGCGACATTAACAGAGACGGTTTTTGCCTTCCCAGGTATGGGGAAAATGTTGATTGATTCTA
TCAAATCAGCTAACAACTCAATGATTGTTGGGTTAACCTTTATTTTCACTGTCTTGTCAATTGTATCTCTACTGTTAGGA
GATATTGCTATGACAATTGTCGATCCACGTATTAAATTGTCAACTAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

60

100

0.6
  amiC Streptococcus thermophilus LMD-9

59.8

100

0.598
  amiC Streptococcus thermophilus LMG 18311

59.8

100

0.598