Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   I6H73_RS01430 Genome accession   NZ_CP066073
Coordinates   278570..279496 (+) Length   308 a.a.
NCBI ID   WP_003049687.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1016     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 273570..284496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H73_RS01420 (I6H73_01420) amiA 275032..277002 (+) 1971 WP_003057820.1 peptide ABC transporter substrate-binding protein Regulator
  I6H73_RS01425 (I6H73_01425) amiC 277068..278570 (+) 1503 WP_003057826.1 ABC transporter permease Regulator
  I6H73_RS01430 (I6H73_01430) amiD 278570..279496 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  I6H73_RS01435 (I6H73_01435) amiE 279505..280575 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  I6H73_RS01440 (I6H73_01440) amiF 280568..281491 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator
  I6H73_RS01445 (I6H73_01445) - 281519..282505 (-) 987 WP_115261915.1 IS30 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34888.93 Da        Isoelectric Point: 9.2024

>NTDB_id=517163 I6H73_RS01430 WP_003049687.1 278570..279496(+) (amiD) [Streptococcus dysgalactiae strain FDAARGOS_1016]
METIDKSKFRFVERDSRASEVIDTPAYSYWKSVFRQFFSKKSTIFMLMILVTILLMSFIYPMFANYDFGDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINVTIGVILGAIWGVSKAFDKVMIEIYNVISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAIKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=517163 I6H73_RS01430 WP_003049687.1 278570..279496(+) (amiD) [Streptococcus dysgalactiae strain FDAARGOS_1016]
ATGGAAACGATTGATAAATCAAAATTTCGATTTGTTGAGCGCGATAGCAGAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTATTGGAAATCCGTATTCCGTCAATTTTTCTCTAAAAAGTCTACTATCTTCATGCTAATGATTTTAGTGACCATCT
TATTGATGAGTTTTATTTACCCAATGTTTGCGAATTATGACTTTGGTGATGTGAGTAATATCAACGATTTCTCGAAACGT
TATATTTGGCCCAACGCCGAATACTGGTTTGGAACAGATAAAAACGGACAATCTTTGTTTGATGGTGTTTGGTATGGAGC
GCGTAATTCTATCTTAATTTCTGTTATAGCAACATTGATTAATGTGACTATCGGAGTTATTTTAGGAGCTATTTGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAGATTTATAATGTCATCTCAAACATTCCTTCAATGTTAATTATCATTGTT
TTGACCTATTCATTAGGTGCTGGTTTTTGGAATTTGATTTTAGCTTTCTGTATCACTGGATGGATCGGTGTAGCTTACTC
TATCCGTGTGCAAATCTTACGTTACCGTGATTTGGAGTACAACCTTGCTAGCCAAACCCTAGGAACACCAATGTATAAAA
TTGCCATTAAGAACCTCTTGCCTCAATTGGTTTCAGTTATCATGACCATGTTGTCACAAATGTTACCAGTGTACGTGTCT
TCTGAGGCTTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACGACTCCAAGCTTAGGGCGTTTGATTGCTAATTATTC
TAGCAACTTAACAACAAATGCTTACCTCTTCTGGATTCCCTTAGTAACGTTGATTTTAGTATCATTACCATTGTATATTG
TCGGACAAAACCTGGCAGATGCCAGCGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.052

100

0.731
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731