Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KZX74_RS06225 Genome accession   NZ_CP080117
Coordinates   1292540..1293277 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain OV24     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1287540..1298277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZX74_RS06195 (KZX74_06195) yfiL 1287699..1288064 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  KZX74_RS06200 (KZX74_06200) aroF 1288274..1289344 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KZX74_RS06205 (KZX74_06205) tyrA 1289355..1290476 (+) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KZX74_RS06210 (KZX74_06210) pheA 1290519..1291679 (-) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  KZX74_RS06215 (KZX74_06215) pheL 1291778..1291825 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KZX74_RS06220 (KZX74_06220) raiA 1291929..1292270 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KZX74_RS06225 (KZX74_06225) comL 1292540..1293277 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KZX74_RS06230 (KZX74_06230) rluD 1293412..1294392 (+) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KZX74_RS06235 (KZX74_06235) yfiH 1294389..1295120 (+) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  KZX74_RS06240 (KZX74_06240) clpC 1295250..1297823 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=517099 KZX74_RS06225 WP_000197686.1 1292540..1293277(-) (comL) [Escherichia coli strain OV24]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=517099 KZX74_RS06225 WP_000197686.1 1292540..1293277(-) (comL) [Escherichia coli strain OV24]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376