Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6H74_RS03290 Genome accession   NZ_CP066069
Coordinates   648146..648637 (+) Length   163 a.a.
NCBI ID   WP_002993238.1    Uniprot ID   A0A9X5LZM9
Organism   Streptococcus dysgalactiae strain FDAARGOS_1017     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 643146..653637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H74_RS03275 (I6H74_03270) - 643289..644637 (+) 1349 WP_111678988.1 IS3 family transposase -
  I6H74_RS03280 (I6H74_03275) mutY 644684..645850 (-) 1167 WP_115257109.1 A/G-specific adenine glycosylase -
  I6H74_RS11015 - 646018..646311 (+) 294 WP_003052683.1 hypothetical protein -
  I6H74_RS03285 (I6H74_03280) rpsF 647834..648124 (+) 291 WP_002983117.1 30S ribosomal protein S6 -
  I6H74_RS03290 (I6H74_03285) ssbA 648146..648637 (+) 492 WP_002993238.1 single-stranded DNA-binding protein Machinery gene
  I6H74_RS03295 (I6H74_03290) rpsR 648802..649041 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  I6H74_RS03300 (I6H74_03295) - 649172..649828 (-) 657 WP_003059462.1 DUF1129 domain-containing protein -
  I6H74_RS03305 (I6H74_03300) - 649960..650904 (-) 945 WP_011888617.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17995.78 Da        Isoelectric Point: 4.8894

>NTDB_id=517093 I6H74_RS03290 WP_002993238.1 648146..648637(+) (ssbA) [Streptococcus dysgalactiae strain FDAARGOS_1017]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=517093 I6H74_RS03290 WP_002993238.1 648146..648637(+) (ssbA) [Streptococcus dysgalactiae strain FDAARGOS_1017]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACGGGTCGCATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368