Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   I6I28_RS02015 Genome accession   NZ_CP066062
Coordinates   393606..394235 (-) Length   209 a.a.
NCBI ID   WP_049406399.1    Uniprot ID   -
Organism   Staphylococcus pettenkoferi strain FDAARGOS_1071     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 388606..399235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I28_RS01985 (I6I28_01985) - 388884..390125 (-) 1242 WP_049406395.1 aminopeptidase -
  I6I28_RS01990 (I6I28_01990) - 390139..390339 (-) 201 WP_002472952.1 DUF1128 family protein -
  I6I28_RS01995 (I6I28_01995) - 390474..390938 (+) 465 WP_049406397.1 low molecular weight protein-tyrosine-phosphatase -
  I6I28_RS02000 (I6I28_02000) - 390943..391245 (+) 303 WP_002472981.1 hypothetical protein -
  I6I28_RS02005 (I6I28_02005) - 391503..392484 (+) 982 Protein_362 YihY/virulence factor BrkB family protein -
  I6I28_RS02010 (I6I28_02010) - 392945..393513 (+) 569 Protein_363 beta-class carbonic anhydrase -
  I6I28_RS02015 (I6I28_02015) vraR 393606..394235 (-) 630 WP_049406399.1 response regulator transcription factor Regulator
  I6I28_RS02020 (I6I28_02020) vraS 394225..395268 (-) 1044 WP_002472963.1 sensor histidine kinase Regulator
  I6I28_RS02025 (I6I28_02025) liaF 395265..395966 (-) 702 WP_002472955.1 cell wall-active antibiotics response protein LiaF -
  I6I28_RS02030 (I6I28_02030) - 396140..396535 (-) 396 WP_049406401.1 hypothetical protein -
  I6I28_RS02035 (I6I28_02035) map 396696..397460 (-) 765 WP_002472950.1 type I methionyl aminopeptidase -
  I6I28_RS02040 (I6I28_02040) - 397617..398606 (+) 990 WP_049406403.1 FUSC family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23723.32 Da        Isoelectric Point: 4.7039

>NTDB_id=517012 I6I28_RS02015 WP_049406399.1 393606..394235(-) (vraR) [Staphylococcus pettenkoferi strain FDAARGOS_1071]
MMIKVLFVDDHEMVRIGISSYLSTQPDLEVVGEGESGKDAIEKAHELQPDLILMDLVMDDMDGVEATTQIKKDLPHIKVL
MLTSYIEDNEVYRALDAGVDSYILKTTSASDIAEAIRKTYNSESVFEAEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHKLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=517012 I6I28_RS02015 WP_049406399.1 393606..394235(-) (vraR) [Staphylococcus pettenkoferi strain FDAARGOS_1071]
GTGATGATTAAAGTATTATTCGTTGATGACCATGAGATGGTACGTATCGGAATTTCTAGTTACTTATCTACGCAACCTGA
CCTCGAAGTCGTAGGAGAAGGGGAATCAGGGAAAGATGCCATTGAGAAAGCGCACGAATTACAACCTGATTTAATATTGA
TGGATCTCGTGATGGACGATATGGATGGTGTAGAAGCCACAACGCAAATTAAGAAGGACTTACCACATATTAAAGTGCTT
ATGCTTACAAGCTACATTGAGGATAATGAAGTTTATCGCGCATTAGACGCGGGGGTGGATAGTTACATCCTCAAGACGAC
GAGTGCGAGTGATATTGCTGAAGCGATTCGTAAGACGTATAATAGCGAATCTGTGTTTGAAGCGGAAGTATTAGTTAAAA
TGCGTAATCGAATGAAACAACGTGCTGAACTTTATGAGATGTTAACAGAGCGTGAGATGGAAATCTTATTGCTTATCGCG
AAAGGTTATTCTAACCAAGAAATCGCGAGTGCCTCTCACATTACGATTAAAACAGTGAAGACGCATGTGAGTAATATTCT
CAGCAAACTTGAAGTTCAAGATAGAACCCAAGCGGTAATCTATGCTTTCCAACACAAATTAATTCAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

89.952

100

0.9
  degU Bacillus subtilis subsp. subtilis str. 168

34.375

100

0.368